2IY4 | pdb_00002iy4

X-ray structure of Dps from Listeria monocytogenes

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X [auth Y]	d2iy4y_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
W [auth X]	d2iy4x_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
V	d2iy4v_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
U	d2iy4u_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
T	d2iy4t_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
S	d2iy4s_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
R	d2iy4r_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
Q	d2iy4q_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
P	d2iy4p_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
O	d2iy4o_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
N	d2iy4n_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
M	d2iy4m_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
L	d2iy4l_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
K	d2iy4k_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
J	d2iy4j_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
I	d2iy4i_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
H	d2iy4h_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
G	d2iy4g_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
F	d2iy4f_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
E	d2iy4e_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
D	d2iy4d_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
C	d2iy4c_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
B	d2iy4b_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
A	d2iy4a_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Y]	ACR_tran	e2iy4Y1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
W [auth X]	ACR_tran	e2iy4X1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
V	ACR_tran	e2iy4V1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
U	ACR_tran	e2iy4U1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
T	ACR_tran	e2iy4T1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
S	ACR_tran	e2iy4S1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
R	ACR_tran	e2iy4R1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
Q	ACR_tran	e2iy4Q1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
P	ACR_tran	e2iy4P1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
O	ACR_tran	e2iy4O1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
N	ACR_tran	e2iy4N1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
M	ACR_tran	e2iy4M1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
L	ACR_tran	e2iy4L1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
K	ACR_tran	e2iy4K1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
J	ACR_tran	e2iy4J1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
I	ACR_tran	e2iy4I1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
H	ACR_tran	e2iy4H1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
G	ACR_tran	e2iy4G1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
F	ACR_tran	e2iy4F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
E	ACR_tran	e2iy4E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
D	ACR_tran	e2iy4D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
C	ACR_tran	e2iy4C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
B	ACR_tran	e2iy4B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
A	ACR_tran	e2iy4A1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X [auth Y]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W [auth X]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	NON-HEME IRON-CONTAINING FERRITIN	oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR023188	DNA-binding protein Dps, conserved site	Conserved Site