Annotations: 2IS5

Crystal structure of 3 residues truncated version of protein NMB1012 from Neisseria meningitides

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2is5d_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	NMB1012-like	Hypothetical protein NMB1012	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)
C	d2is5c2	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	NMB1012-like	Hypothetical protein NMB1012	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)
C	d2is5c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)
B	d2is5b_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	NMB1012-like	Hypothetical protein NMB1012	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)
A	d2is5a2	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	NMB1012-like	Hypothetical protein NMB1012	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)
A	d2is5a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Neisseria meningitidis serogroup B ) [TaxId: 491 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Lysozyme-like	8034537	3001879	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Lysozyme-like	8034537	3001879	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Lysozyme-like	8034537	3001879	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8034537	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Met_synt_B12	e2is5D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Met_synt_B12	ECOD (v294.1)
C	Met_synt_B12	e2is5C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Met_synt_B12	ECOD (v294.1)
B	Met_synt_B12	e2is5B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Met_synt_B12	ECOD (v294.1)
A	Met_synt_B12	e2is5A1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Met_synt_B12	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.141.10	Mainly Alpha	Up-down Bundle	Chitosanase, subunit A	domain 1	CATH (4.3.0)
C	1.20.141.10	Mainly Alpha	Up-down Bundle	Chitosanase, subunit A	domain 1	CATH (4.3.0)
B	1.20.141.10	Mainly Alpha	Up-down Bundle	Chitosanase, subunit A	domain 1	CATH (4.3.0)
A	1.20.141.10	Mainly Alpha	Up-down Bundle	Chitosanase, subunit A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF05838	Glycosyl hydrolase 108 (Glyco_hydro_108)	Glycosyl hydrolase 108	This family acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity [1]. In bacteria, it may activate the secretion of large ...	This family acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity [1]. In bacteria, it may activate the secretion of large proteins via the breaking and rearrangement of the peptidoglycan layer during secretion [2,3]. It is frequently found at the N-terminus of proteins containing a C-terminal Pfam:PF09374 domain.	Domain
A, B, C, D	PF09374	Predicted Peptidoglycan domain (PG_binding_3)	Predicted Peptidoglycan domain	This family contains a potential peptidoglycan binding domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR008565	TtsA-like, Glycoside hydrolase family 108 domain	Domain
A, B, C, D	IPR018537	Peptidoglycan binding domain	Domain
A, B, C, D	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.