2IQC

Crystal structure of Human FancF Protein that Functions in the Assembly of a DNA Damage Signaling Complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	FANCF-like	8045938	4004773	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MgtE/FliG domain-like	8092488	3000127	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FANCF	e2iqcA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: FANCF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.490	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF11107	Fanconi anemia group F protein (FANCF) (FANCF)	Fanconi anemia group F protein (FANCF)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Fanconi anemia group F protein	-	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process interstrand cross-link repair cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process interstrand cross-link repair macromolecule metabolic process DNA repair	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle Fanconi anaemia nuclear complex intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle Fanconi anaemia nuclear complex intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR035428	Fanconi anemia group F protein	Family
A	IPR038505	FANCF, C-terminal domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9NPI8	Fanconi anemia Fanconi anemia complementation group F lung carcinoma neurofibromatosis type 1 primitive neuroectodermal tumor acute myeloid leukemia congenital anemia esophageal atresia/tracheoesophageal fistula head and neck cancer inherited aplastic anemia leukemia malignant ependymoma osteosarcoma Radial club hand aplastic anemia Fanconi anemia Fanconi anemia complementation group F lung carcinoma neurofibromatosis type 1 primitive neuroectodermal tumor acute myeloid leukemia congenital anemia esophageal atresia/tracheoesophageal fistula head and neck cancer inherited aplastic anemia leukemia malignant ependymoma osteosarcoma Radial club hand aplastic anemia hematopoietic and lymphoid system neoplasm intellectual disability lung cancer medulloblastoma rheumatoid arthritis atypical teratoid rhabdoid tumor Fanconi anemia complementation group A glioblastoma hepatocellular carcinoma large cell medulloblastoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.