2IN5

Crystal Structure of the hypothetical lipoprotein YmcC from Escherichia coli (K12), Northeast Structural Genomics target ER552.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2in5a1	All beta proteins	YmcC-like	YmcC-like	YmcC-like	Hypothetical lipoprotein YmcC	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d2in5a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d2in5b_	All beta proteins	YmcC-like	YmcC-like	YmcC-like	Hypothetical lipoprotein YmcC	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YmcC-like	8022175	4001896	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YmcC-like	8034555	3000532	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YmcC-like	8034555	3000532	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YjbF	e2in5A1	A: beta barrels	X: YmcC-like (From Topology)	H: YmcC-like (From Topology)	T: YmcC-like	F: YjbF	ECOD (1.6)
B	YjbF	e2in5B1	A: beta barrels	X: YmcC-like (From Topology)	H: YmcC-like (From Topology)	T: YmcC-like	F: YjbF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.360.10	Mainly Beta	Beta Barrel	YmcC-like fold	YmcC-like	CATH (4.3.0)
B	2.40.360.10	Mainly Beta	Beta Barrel	YmcC-like fold	YmcC-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11102	Group 4 capsule polysaccharide lipoprotein gfcB, YjbF (YjbF)	Group 4 capsule polysaccharide lipoprotein gfcB, YjbF	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical lipoprotein ymcC	-	-	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR021308	Group 4 capsule polysaccharide formation lipoprotein GfcB	Family
A, B	IPR023373	YmcC-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.