2IJ0
Structural basis of T cell specificity and activation by the bacterial superantigen toxic shock syndrome toxin-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Superantigen toxins C-terminal domain-like | 8042758 | 3000376 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Bacterial enterotoxins | 8042756 | 3000434 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2 Family | Superantigen toxins C-terminal domain | 8030379 | 4000990 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2 Family | Superantigen toxins N-terminal domain | 8030377 | 4001839 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2 Superfamily | Superantigen toxins C-terminal domain-like | 8042758 | 3000376 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2 Superfamily | Bacterial enterotoxins | 8042756 | 3000434 | SCOP2 (2022-06-29) |
B [auth E] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054453 | 3000071 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2 Family | V set domains-like | 8054452 | 4007530 | SCOP2 (2022-06-29) |
D [auth C] | SCOP2 Superfamily | Immunoglobulin (Ig) domain-like | 8054453 | 3000071 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e2ij0A1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF02876 | e2ij0A2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF02876 | ECOD (1.6) |
C [auth B] | F_UNCLASSIFIED | e2ij0B1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | PF02876 | e2ij0B2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF02876 | ECOD (1.6) |
B [auth E] | PF07686 | e2ij0E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth C] | PF07686 | e2ij0C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.120 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
A | 2.40.50.110 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
C [auth B] | 3.10.20.120 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
C [auth B] | 2.40.50.110 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
B [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth E], D [auth C] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C [auth B] | Toxic shock syndrome toxin-1 | - | ||
B [auth E], D [auth C] | penultimate affinity-matured variant of hVbeta 2.1, D10 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR006126 | Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site | Conserved Site |
A, C [auth B] | IPR016091 | Superantigen toxin, C-terminal | Homologous Superfamily |
A, C [auth B] | IPR013307 | Superantigen, staphylococcal/streptococcal toxin, bacterial | Family |
A, C [auth B] | IPR008992 | Enterotoxin | Homologous Superfamily |
B [auth E], D [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth E], D [auth C] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth E], D [auth C] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth E], D [auth C] | IPR007110 | Immunoglobulin-like domain | Domain |