2IHX | pdb_00002ihx

Solution Structure of the Rous Sarcoma Virus Nucleocapsid Protein:uPsi RNA Packaging Signal Complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	zf-CCHC_2	e2ihxA1	A: few secondary structure elements	X: CCHC-type 1 zinc finger	H: Retrovirus zinc finger-related domains (From Topology)	T: Retrovirus zinc finger-related domains	F: zf-CCHC_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	4.10.60.10	Few Secondary Structures	Irregular	HIV-1 Nucleocapsid Protein	Zinc finger, CCHC-type	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	uPsi RNA	-	-	-
B [auth A]	Nucleocapsid (NC) Protein	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity binding nucleic acid binding structural constituent of virion structural molecule activity cation binding transition metal ion binding zinc ion binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity binding nucleic acid binding structural constituent of virion structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis viral gene expression viral translational frameshifting viral translation virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis viral gene expression viral translational frameshifting viral translation proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleoplasm host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region host cell nucleolus viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleoplasm host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region host cell nucleolus viral capsid virion component host cell plasma membrane host cell membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR004028	Retroviral Gag polyprotein, M	Domain
B [auth A]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
B [auth A]	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
B [auth A]	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
B [auth A]	IPR034170	Retropepsin-like catalytic domain	Domain
B [auth A]	IPR001878	Zinc finger, CCHC-type	Domain
B [auth A]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
B [auth A]	IPR010999	Retroviral matrix protein	Homologous Superfamily
B [auth A]	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
B [auth A]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
B [auth A]	IPR001969	Aspartic peptidase, active site	Active Site
B [auth A]	IPR018061	Retropepsins	Domain
B [auth A]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.