2IF6 | pdb_00002if6

Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2if6b_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	YiiX-like	Hypothetical protein YiiX	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
A	d2if6a1	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	YiiX-like	Hypothetical protein YiiX	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cysteine proteinases	8034496	3001808	SCOP2B (2022-06-29)
A	SCOP2 Family	YiiX-like	8022116	4002549	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cysteine proteinases	8034496	3001808	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Phage_lysozyme	e2if6B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Phage_lysozyme	ECOD (v294.1)
A	Peptidase_C92	e2if6A1	A: few secondary structure elements	X: Cysteine proteinases-like	H: Cysteine proteinases	T: Cysteine proteinases	F: Peptidase_C92	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)
A	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05708	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family (Peptidase_C92)	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical protein yiiX	hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR024453	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.