2I9W
Crystal structure of a sec-c motif containing protein (psyc_2064) from psychrobacter arcticus at 1.75 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2i9wa1 | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | SEC-C associated NTF2-like domain | Hypothetical protein Psyc2064 | (Psychrobacter arcticus ) [TaxId: 334543 ], | SCOPe (2.08) |
A | d2i9wa2 | Small proteins | Sec-C motif | Sec-C motif | Sec-C motif | Hypothetical protein Psyc2064 | (Psychrobacter arcticus ) [TaxId: 334543 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SEC-C associated NTF2-like domain | 8022061 | 4001692 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Sec-C motif | 8022063 | 4001879 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Sec-C motif | 8022065 | 4001879 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | NTF2-like | 8034441 | 3000472 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Sec-C motif | 8034443 | 3000493 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Sec-C motif | 8034445 | 3000493 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YchJ | e2i9wA1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: YchJ | ECOD (1.6) |
A | SEC-C | e2i9wA3 | A: few secondary structure elements | X: Sec-C motif (From Topology) | H: Sec-C motif (From Topology) | T: Sec-C motif | F: SEC-C | ECOD (1.6) |
A | YchJ_like | e2i9wA2 | A: few secondary structure elements | X: Sec-C motif (From Topology) | H: Sec-C motif (From Topology) | T: Sec-C motif | F: YchJ_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.450.50 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17775 | UPF0225 domain (UPF0225) | UPF0225 domain | This entry represents an NTF2-like domain found in bacterial proteins. | Domain | |
PF02810 | SEC-C motif (SEC-C) | SEC-C motif | - | Family | |
PF21612 | YchJ family protein, N-terminal domain (YchJ_N) | YchJ family protein, N-terminal domain | This domain is found at the N-terminal end of the functionally uncharacterised YchJ family protein from Psychrobacter arcticus (Swiss:Q4FPZ7). It shows an all-alpha structure. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Hypothetical protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032710 | NTF2-like domain superfamily | Homologous Superfamily | |
IPR048469 | YchJ-like, middle NTF2-like domain | Domain | |
IPR048463 | YchJ-like, N-terminal domain | Domain | |
IPR004027 | SEC-C motif | Conserved Site |