2HKL
Crystal structure of Enterococcus faecium L,D-transpeptidase C442S mutant
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | L D-transpeptidase pre-catalytic domain-like | 8035521 | 3000360 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | L D-transpeptidase catalytic domain-like | 8035519 | 3000695 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | L D-transpeptidase pre-catalytic domain-like | 8035521 | 3000360 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | L D-transpeptidase catalytic domain-like | 8035519 | 3000695 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | L D-transpeptidase pre-catalytic domain-like | 8035521 | 3000360 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | L D-transpeptidase catalytic domain-like | 8035519 | 3000695 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03734 | e2hklA1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: PF03734 | ECOD (1.6) |
A | PF12229 | e2hklA2 | A: a+b complex topology | X: L,D-transpeptidase pre-catalytic domain-like (From Topology) | H: L,D-transpeptidase pre-catalytic domain-like (From Topology) | T: L,D-transpeptidase pre-catalytic domain-like | F: PF12229 | ECOD (1.6) |
B | PF03734 | e2hklB1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: PF03734 | ECOD (1.6) |
B | PF12229 | e2hklB2 | A: a+b complex topology | X: L,D-transpeptidase pre-catalytic domain-like (From Topology) | H: L,D-transpeptidase pre-catalytic domain-like (From Topology) | T: L,D-transpeptidase pre-catalytic domain-like | F: PF12229 | ECOD (1.6) |
C | PF03734 | e2hklC1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: PF03734 | ECOD (1.6) |
C | PF12229 | e2hklC2 | A: a+b complex topology | X: L,D-transpeptidase pre-catalytic domain-like (From Topology) | H: L,D-transpeptidase pre-catalytic domain-like (From Topology) | T: L,D-transpeptidase pre-catalytic domain-like | F: PF12229 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.800 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
A | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
B | 3.10.20.800 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
B | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
C | 3.10.20.800 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
C | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12229 | Putative peptidoglycan binding domain (PG_binding_4) | Putative peptidoglycan binding domain | This domain is found associated with the L,D-transpeptidase domain Pfam:PF03734. The structure of this domain has been solved and shows a mixed alpha-beta fold composed of nine beta strands and four alpha helices. This domain is usually found to be ... | Domain | |
PF03734 | L,D-transpeptidase catalytic domain (YkuD) | L,D-transpeptidase catalytic domain | This family of proteins are found in a range of bacteria. It has been shown that this domain can act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking [1]. This gives bacteria resistance to beta-lacta ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038054 | L,D-transpeptidase central domain-like superfamily | Homologous Superfamily | |
IPR022029 | YoaR-like, putative peptidoglycan binding domain | Domain | |
IPR005490 | L,D-transpeptidase catalytic domain | Domain | |
IPR038063 | L,D-transpeptidase catalytic domain-like | Homologous Superfamily |