2HAY | pdb_00002hay

The Crystal Structure of the Putative NAD(P)H-Flavin Oxidoreductase from Streptococcus pyogenes M1 GAS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2hayd1	Alpha and beta proteins (a+b)	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
D	d2hayd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
C	d2hayc_	Alpha and beta proteins (a+b)	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
B	d2hayb_	Alpha and beta proteins (a+b)	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)
A	d2haya_	Alpha and beta proteins (a+b)	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like	automated matches	automated matches	(Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	FMN-dependent nitroreductase-like	8081382	3001947	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FMN-dependent nitroreductase-like	8081382	3001947	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FMN-dependent nitroreductase-like	8081382	3001947	SCOP2B (2022-06-29)
A	SCOP2 Family	NADH oxidase/flavin reductase	8081381	4001599	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FMN-dependent nitroreductase-like	8081382	3001947	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	HMG_CoA_synt_N	e2hayD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: HMG_CoA_synt_N	ECOD (develop294)
C	HMG_CoA_synt_N	e2hayC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: HMG_CoA_synt_N	ECOD (develop294)
B	HMG_CoA_synt_N	e2hayB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: HMG_CoA_synt_N	ECOD (develop294)
A	Ldh_1_N	e2hayA1	A: alpha bundles	X: Globin-like	H: Globin-like	T: Globin-like	F: Ldh_1_N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
C	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
B	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
A	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00881	Nitroreductase family (Nitroreductase)	Nitroreductase family	The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative NAD(P)H-flavin oxidoreductase	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor oxidoreductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	2,4,6-trinitrotoluene catabolic process catabolic process benzene-containing compound metabolic process nitrotoluene catabolic process trinitrotoluene catabolic process metabolic process cellular process toluene-containing compound catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050627	Nitroreductase/BluB	Family
A, B, C, D	IPR029479	Nitroreductase	Domain
A, B, C, D	IPR000415	Nitroreductase-like	Homologous Superfamily
A, B, C, D	IPR033878	Oxygen-insensitive NAD(P)H nitroreductase NfsB-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.