2GU3 | pdb_00002gu3

YpmB protein from Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gu3a1	Alpha and beta proteins (a+b)	Cystatin-like	Cystatin/monellin	PepSY-like	Uncharacterized protein YpmB	(Bacillus subtilis subsp. subtilis str. 168 ) [TaxId: 224308 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PepSY-like	8021739	4002700	SCOP2 (2022-06-29)
A	SCOP2 Family	PepSY-like	8021741	4002700	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cystatin/monellin	8034119	3000441	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cystatin/monellin	8034121	3000441	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YpmB	e2gu3A2	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: YpmB	ECOD (1.6)
A	PepSY	e2gu3A1	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: PepSY	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.450.40	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17881	Cell wall elongation regulator TseB-like domain (TseB)	Cell wall elongation regulator TseB-like domain	This domain is found in the probable cell wall elongation regulator TseB from Bacillus subtilis and similar sequences from firmicutes. TseB is required for normal cell shape. It plays an important role in cell wall elongation during exponential phase ...	This domain is found in the probable cell wall elongation regulator TseB from Bacillus subtilis and similar sequences from firmicutes. TseB is required for normal cell shape. It plays an important role in cell wall elongation during exponential phase and spore outgrowth [1]. This domain shows an alpha-beta structure.	Domain
A	PF03413	Peptidase propeptide and YPEB domain (PepSY)	Peptidase propeptide and YPEB domain	This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis ...	This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	YpmB protein	-	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR041401	Cell wall elongation regulator TseB-like domain	Domain
A	IPR025711	PepSY domain	Domain
A	IPR046350	Cystatin superfamily	Homologous Superfamily
A	IPR054944	Cell wall elongation/penicillin-binding protein regulator TseB	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.