2GOL
Xray Structure of Gag278
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2gola_ | All alpha proteins | Retroviral matrix proteins | Retroviral matrix proteins | Immunodeficiency virus matrix proteins | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
B | d2golb_ | All alpha proteins | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | HIV-1 capsid protein | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
C [auth D] | d2gold_ | All alpha proteins | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | HIV-1 capsid protein | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Immunodeficiency virus matrix proteins | 8029601 | 4001043 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Retroviral matrix proteins | 8041980 | 3000562 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8101631 | 3000745 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2 Family | Retrovirus capsid protein N-terminal core domain | 8101630 | 4001095 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Superfamily | Retrovirus capsid protein N-terminal core domain | 8101631 | 3000745 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Gag_p17 | e2golA1 | A: alpha arrays | X: Retroviral matrix proteins (From Topology) | H: Retroviral matrix proteins (From Topology) | T: Retroviral matrix proteins | F: Gag_p17 | ECOD (1.6) |
B | Gag_p24_N | e2golB1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
C [auth D] | Gag_p24_N | e2golD1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.90 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
C [auth D] | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00540 | gag gene protein p17 (matrix protein) (Gag_p17) | gag gene protein p17 (matrix protein) | The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus. | Domain | |
B, C [auth D] | PF00607 | gag protein p24 N-terminal domain (Gag_p24) | gag protein p24 N-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |
B, C [auth D] | PF19317 | Gag protein p24 C-terminal domain (Gag_p24_C) | Gag protein p24 C-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Matrix protein p17 (MA) | - | - | ||
B, C [auth D] | Capsid protein p24 (CA) | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000071 | Immunodeficiency lentiviral matrix, N-terminal | Domain | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR012344 | Matrix protein, lentiviral and alpha-retroviral, N-terminal | Homologous Superfamily | |
B, C [auth D] | IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain |
B, C [auth D] | IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily |
B, C [auth D] | IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |