2GMV | pdb_00002gmv

PEPCK complex with a GTP-competitive inhibitor

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2gmvb1	Alpha and beta proteins (a/b)	PEP carboxykinase-like	PEP carboxykinase-like	PEP carboxykinase C-terminal domain	Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2gmvb2	Alpha and beta proteins (a/b)	PEP carboxykinase N-terminal domain	PEP carboxykinase N-terminal domain	PEP carboxykinase N-terminal domain	Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2gmva1	Alpha and beta proteins (a/b)	PEP carboxykinase-like	PEP carboxykinase-like	PEP carboxykinase C-terminal domain	Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2gmva2	Alpha and beta proteins (a/b)	PEP carboxykinase N-terminal domain	PEP carboxykinase N-terminal domain	PEP carboxykinase N-terminal domain	Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PEPCK/HprK-like	8018041	3001670	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PEP carboxykinase N-terminal domain	8055993	3001788	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PEP carboxykinase N-terminal domain	8055993	3001788	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PEPCK/HprK-like	8018041	3001670	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Usp	e2gmvB1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Usp	ECOD (develop294)
B	Glyco_hydro_20b	e2gmvB2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Glyco_hydro_20b	ECOD (develop294)
A	Usp	e2gmvA1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Usp	ECOD (develop294)
A	Glyco_hydro_20b	e2gmvA2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Glyco_hydro_20b	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.449.10	Alpha Beta	3-Layer(aba) Sandwich	Phosphoenolpyruvate Carboxykinase	domain 1	CATH (4.3.0)
B	2.170.8.10	Mainly Beta	Beta Complex	Phosphoenolpyruvate Carboxykinase	domain 2	CATH (4.3.0)
B	3.90.228.20	Alpha Beta	Alpha-Beta Complex	Phosphoenolpyruvate Carboxykinase	domain 3	CATH (4.3.0)
A	3.40.449.10	Alpha Beta	3-Layer(aba) Sandwich	Phosphoenolpyruvate Carboxykinase	domain 1	CATH (4.3.0)
A	2.170.8.10	Mainly Beta	Beta Complex	Phosphoenolpyruvate Carboxykinase	domain 2	CATH (4.3.0)
A	3.90.228.20	Alpha Beta	Alpha-Beta Complex	Phosphoenolpyruvate Carboxykinase	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00821	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain (PEPCK_GTP)	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain	Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate.	Domain
A, B	PF17297	Phosphoenolpyruvate carboxykinase N-terminal domain (PEPCK_N)	Phosphoenolpyruvate carboxykinase N-terminal domain	Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phosphoenolpyruvate carboxykinase, cytosolic	catalytic activity, acting on a protein protein serine kinase activity (using GTP as donor) kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding catalytic activity, acting on a protein protein serine kinase activity (using GTP as donor) kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding phosphoenolpyruvate carboxykinase activity phosphoenolpyruvate carboxykinase (GTP) activity carboxy-lyase activity lyase activity carbon-carbon lyase activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding organic acid binding carboxylic acid binding magnesium ion binding	tricarboxylic acid metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process short-chain fatty acid metabolic process primary metabolic process organic acid catabolic process tricarboxylic acid metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process short-chain fatty acid metabolic process primary metabolic process organic acid catabolic process fatty acid catabolic process propionate catabolic process monocarboxylic acid catabolic process carboxylic acid catabolic process monocarboxylic acid metabolic process small molecule catabolic process lipid metabolic process propionate metabolic process cellular response to stimulus response to stimulus homeostatic process response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose response to chemical glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus neutral lipid metabolic process neutral lipid biosynthetic process glycerol biosynthetic process lipid biosynthetic process alcohol metabolic process acylglycerol biosynthetic process triglyceride metabolic process triglyceride biosynthetic process polyol biosynthetic process pyruvate metabolic process carbohydrate metabolic process polyol metabolic process small molecule biosynthetic process carbohydrate biosynthetic process alditol biosynthetic process glycerol biosynthetic process from pyruvate glycerol metabolic process biosynthetic process glycerolipid biosynthetic process alcohol biosynthetic process glycerolipid metabolic process acylglycerol metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of lipid metabolic process biological regulation positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of lipid biosynthetic process positive regulation of biosynthetic process positive regulation of lipid metabolic process regulation of lipid biosynthetic process regulation of metabolic process positive regulation of cellular process response to ketone response to lipid cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus cellular response to corticosteroid stimulus response to corticosteroid cellular response to lipid response to dexamethasone monosaccharide metabolic process hexose metabolic process glucose metabolic process developmental process multicellular organismal process epithelium development cellular developmental process gland development animal organ development tissue development liver development epithelial cell differentiation multicellular organism development cell differentiation hepaticobiliary system development anatomical structure development hepatocyte differentiation system development biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus response to peptide hormone response to insulin response to nitrogen compound monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process protein phosphorylation phosphorylation peptidyl-serine modification peptidyl-serine phosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cellular response to nitrogen compound cellular response to peptide hormone stimulus cellular response to insulin stimulus carbohydrate derivative biosynthetic process carbohydrate derivative metabolic process glyceraldehyde-3-phosphate metabolic process aldehyde biosynthetic process aldehyde metabolic process organophosphate metabolic process organophosphate biosynthetic process glyceraldehyde-3-phosphate biosynthetic process dicarboxylic acid metabolic process oxaloacetate metabolic process cellular response to potassium ion starvation cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to starvation response to pH response to abiotic stimulus response to acidic pH immunological memory formation process regulation of immune effector process regulation of leukocyte differentiation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response positive regulation of T cell differentiation regulation of cell development positive regulation of developmental process positive regulation of cell activation positive regulation of immune response T cell activation positive regulation of leukocyte activation regulation of immune system process T cell differentiation positive regulation of immune system process positive regulation of memory T cell differentiation positive regulation of T cell activation immune response positive regulation of cell development immune effector process regulation of response to stimulus regulation of leukocyte cell-cell adhesion regulation of immune response positive regulation of multicellular organismal process leukocyte differentiation regulation of developmental process cell development positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of response to stimulus memory T cell differentiation positive regulation of lymphocyte activation cell adhesion cell-cell adhesion T cell activation involved in immune response positive regulation of hemopoiesis positive regulation of cell differentiation leukocyte activation involved in immune response positive regulation of immune effector process regulation of multicellular organismal process regulation of cell-cell adhesion lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation T cell differentiation involved in immune response regulation of memory T cell differentiation immune system process regulation of hemopoiesis immunological memory process positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR008209	Phosphoenolpyruvate carboxykinase, GTP-utilising	Family
A, B	IPR008210	Phosphoenolpyruvate carboxykinase, N-terminal	Homologous Superfamily
A, B	IPR035078	Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal	Domain
A, B	IPR035077	Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain	Domain
A, B	IPR013035	Phosphoenolpyruvate carboxykinase, C-terminal	Homologous Superfamily
A, B	IPR018091	Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P35558	phosphoenolpyruvate carboxykinase deficiency phosphoenolpyruvate carboxykinase deficiency, cytosolic congestive heart failure Liver Cirrhosis, Experimental obesity disorder psoriasis ulcerative colitis breast fibroadenoma ductal breast carcinoma in situ heart failure herpes zoster lung carcinoma nephrosclerosis schizophrenia atopic eczema phosphoenolpyruvate carboxykinase deficiency phosphoenolpyruvate carboxykinase deficiency, cytosolic congestive heart failure Liver Cirrhosis, Experimental obesity disorder psoriasis ulcerative colitis breast fibroadenoma ductal breast carcinoma in situ heart failure herpes zoster lung carcinoma nephrosclerosis schizophrenia atopic eczema Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma malignant colon neoplasm pituitary cancer breast carcinoma hepatocellular carcinoma lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.