2GJV | pdb_00002gjv

Crystal Structure of a Protein of Unknown Function from Salmonella typhimurium

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gjva1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
A	d2gjva2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
B	d2gjvb2	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
B	d2gjvb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
C	d2gjvc2	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
C	d2gjvc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
D	d2gjvd2	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
D	d2gjvd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
E	d2gjve2	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
E	d2gjve3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
F	d2gjvf2	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	STM4215-like	Putative cytoplasmic protein STM4215	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
F	d2gjvf3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	STM4215-like	8029549	4003949	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail protein-like	8041928	3001913	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Phage tail protein-like	8041928	3001913	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail protein-like	8041928	3001913	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail protein-like	8041928	3001913	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail protein-like	8041928	3001913	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage tail protein-like	8041928	3001913	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Gp37	e2gjvA1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)
B	Gp37	e2gjvB1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)
C	Gp37	e2gjvC1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)
D	Gp37	e2gjvD1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)
E	Gp37	e2gjvE1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)
F	Gp37	e2gjvF1	A: a+b two layers	X: Alpha-beta plaits	H: Phage tail protein-like (From Topology)	T: Phage tail protein-like	F: Gp37	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)
B	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)
C	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)
D	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)
E	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)
F	3.30.2000.10	Alpha Beta	2-Layer Sandwich	STM4215-like	Phage tail protein-like	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF09646	Gp37 protein (Gp37)	Gp37 protein	This protein of 154 residues consists of a unit of helices and beta sheets that crystallises into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral or ...	This protein of 154 residues consists of a unit of helices and beta sheets that crystallises into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	putative cytoplasmic protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR018602	Gp37/putative cytoplasmic protein STM4215	Family
A, B, C, D, E A, B, C, D, E, F	IPR038042	Gp37-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.