2G9H | pdb_00002g9h

Crystal Structure of Staphylococcal Enterotoxin I (SEI) in Complex with a Human MHC class II Molecule


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMHC antigen-recognition domain 8034737 3000521 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054705 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMHC antigen-recognition domain 8055636 3000521 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054703 3000071 SCOP2B (2022-06-29)
DSCOP2 FamilySuperantigen toxins, N-terminal domain 8020516 4001839 SCOP2 (2022-06-29)
DSCOP2 FamilySuperantigen toxins, C-terminal domain 8020517 4000990 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyBacterial enterotoxins 8032896 3000434 SCOP2 (2022-06-29)
DSCOP2 SuperfamilySuperantigen toxins C-terminal domain-like 8032897 3000376 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae2g9hA1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Ae2g9hA2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Anthrax_toxAF:ECOD (20:10:01)
Be2g9hB1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
Be2g9hB2 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: MHC_II_betaF:ECOD (20:10:01)
De2g9hD1 A: OB-foldX: Bacterial enterotoxinsH: Bacterial enterotoxinsT: Stap_Strp_toxinF:ECOD (20:10:01)
De2g9hD2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: DUF3197F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
MH2 HLA-DRA*0101_HLA-DRB1*0101 II-ALPHA Homo sapiens (human) HLA-DRA*0101, HLA-DRA*0102 G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_BETA IMGT (202609-0)
MH2 HLA-DRA*0101_HLA-DRB1*0101 II-BETA Homo sapiens (human) HLA-DRB1*0101 G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_BETA IMGT (202609-0)
Superantigen enterotoxin type I (SEI) Toxin Staphylococcus aureus entI*01 R-LIKE-DOMAIN SAG-DOMAIN TOX Protein IMGT (202609-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domainDomain
PF00969Class II histocompatibility antigen, beta domain (MHC_II_beta)Class II histocompatibility antigen, beta domainDomain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HLA class II histocompatibility antigen, DR alpha chain
HLA class II histocompatibility antigen, DRB1-1 beta chain
extracellular enterotoxin type I -
Hemagglutinin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR001003MHC class II, alpha chain, N-terminalDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR000353MHC class II, beta chain, N-terminalDomain
IPR006123Staphylococcal/Streptococcal toxin, beta-grasp domainDomain
IPR006126Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved siteConserved Site
IPR016091Superantigen toxin, C-terminalHomologous Superfamily
IPR006173Staphylococcal/Streptococcal toxin, OB-foldDomain
IPR013307Superantigen, staphylococcal/streptococcal toxin, bacterialFamily
IPR008992EnterotoxinHomologous Superfamily
IPR001364Haemagglutinin, influenzavirus A/BFamily
IPR008980Viral capsid/haemagglutinin proteinHomologous Superfamily
IPR000149Haemagglutinin, influenzavirus AFamily
IPR013828Haemagglutinin, HA1 chain, alpha/beta domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP01903
PharosP01911