2FWF | pdb_00002fwf

high resolution crystal structure of the C-terminal domain of the electron transfer catalyst DsbD (reduced form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2fwfa2	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Thioltransferase	Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2fwfa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thioredoxin-like	8041427	3000031	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2fwfA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: ECH_1	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13098	Thioredoxin-like domain (Thioredoxin_2)	Thioredoxin-like domain	This entry represents the thioredoxin domain, which is found in proteins from all the kingdoms of living organisms. It functions as a general protein disulphide oxidoreductase. It contains a cis-proline located in a loop preceding beta-strand 4, whic ...	This entry represents the thioredoxin domain, which is found in proteins from all the kingdoms of living organisms. It functions as a general protein disulphide oxidoreductase. It contains a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function. It shows a beta-sheet sandwiched between alpha-helices [11-12].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Thiol:disulfide interchange protein dsbD	oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity oxidoreductase activity catalytic activity, acting on a protein protein-disulfide reductase activity catalytic activity protein-disulfide reductase [NAD(P)H] activity oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor electron transfer activity	response to copper ion response to stimulus response to metal ion response to chemical cell redox homeostasis cellular homeostasis homeostatic process cytochrome complex assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process response to copper ion response to stimulus response to metal ion response to chemical cell redox homeostasis cellular homeostasis homeostatic process cytochrome complex assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR028250	Thiol:disulfide interchange protein DsbD, N-terminal domain	Domain
A	IPR013766	Thioredoxin domain	Domain
A	IPR003834	Cytochrome C biogenesis protein, transmembrane domain	Domain
A	IPR012336	Thioredoxin-like fold	Domain
A	IPR022910	Thiol:disulphide interchange protein DsbD	Family
A	IPR017937	Thioredoxin, conserved site	Conserved Site
A	IPR035671	DsbD gamma	Domain
A	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A	IPR036929	Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.