Open Form of a Class A Transpeptidase Domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2fffb1 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | Penicillin-binding protein 1b, transpeptidase domain | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Ion_trans_2 | e2fffB1 | A: alpha bundles | X: EGF-like | H: Rpp14/Pop5-like | T: Rpp14/Pop5-like | F: Ion_trans_2 | ECOD (develop294) |
| B | Transpeptidase | e2fffB2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: Transpeptidase | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.1310.40 | Alpha Beta | Alpha-Beta Complex | Penicillin-binding protein 2a (Domain 2) | CATH (4.3.0) | |
| B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
| B | 3.40.50.12800 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036950 | Transglycosylase domain | Homologous Superfamily | |
| IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
| IPR050396 | Glycosyltransferase 51/Transpeptidase | Family | |
| IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
| IPR001264 | Glycosyl transferase, family 51 | Domain | |
| IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
| IPR036950 | Transglycosylase domain | Homologous Superfamily | |
| IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
| IPR050396 | Glycosyltransferase 51/Transpeptidase | Family | |
| IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
| IPR001264 | Glycosyl transferase, family 51 | Domain | |
| IPR001460 | Penicillin-binding protein, transpeptidase | Domain |














