Crystal Structure of YvdT from Bacillus subtilis
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | TetR_N | e2f07B1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
| B | TetR_C_11_like_2 | e2f07B2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_11_like_2 | ECOD (1.6) |
| A | TetR_N | e2f07A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: TetR_N | ECOD (1.6) |
| A | TetR_C_11_like_2 | e2f07A2 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: TetR_C_11_like_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
| A | 1.10.357.10 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00440 | Bacterial regulatory proteins, tetR family (TetR_N) | Bacterial regulatory proteins, tetR family | Domain | ||
| PF17934 | Tetracyclin repressor-like, C-terminal domain (TetR_C_26) | Tetracyclin repressor-like, C-terminal domain | This entry represents the C-terminal domain present in putative HTH-type transcriptional regulator. Family members are found in bacilli. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| YvdT | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
| IPR050624 | HTH-type Transcriptional Regulator | Family | |
| IPR041603 | YvdT, C-terminal | Domain | |
| IPR001647 | DNA-binding HTH domain, TetR-type | Domain | |
| IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | Homologous Superfamily |














