2E12 | pdb_00002e12

The crystal structure of XC5848 from Xanthomonas campestris adopting a novel variant of Sm-like motif


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyXC5848-like 8102997 3002778 SCOP2B (2022-06-29)
ASCOP2 FamilyXC5848-like 8046728 4005264 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyXC5848-like 8102997 3002778 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRpf1_Ce2e12B1 A: beta barrelsX: HTHH: NudixT: NudixF: Rpf1_CECOD (v294.2)
APeptidase_M19e2e12A1 A: beta barrelsX: Bromodomain-likeH: SH3T: SH3F: Peptidase_M19ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.30.30.720 Mainly Beta Roll SH3 type barrels. Protein of unknown function (DUF3247)CATH (4.3.0)
A2.30.30.720 Mainly Beta Roll SH3 type barrels. Protein of unknown function (DUF3247)CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF11607Domain of unknown function (DUF3247) (DUF3247)Domain of unknown function (DUF3247)This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed ...This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR021649Protein of unknown function DUF3247Family