2DN8

Solution Structure of RSGI RUH-053, an Apo-Biotin Carboxy Carrier Protein from Human Transcarboxylase

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00364	e2dn8A1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21385	Acetyl-CoA carboxylase, BT domain (ACCA_BT)	Acetyl-CoA carboxylase, BT domain	This is the BC-CT interaction domain (BT) which is between the BC (biotin carboxylase, which catalyses the MgATP-dependent carboxylation of N1' atom of biotin) and BCCP (biotin carboxyl carrier protein) domains of Acetyl-CoA carboxylase. This domain ...	This is the BC-CT interaction domain (BT) which is between the BC (biotin carboxylase, which catalyses the MgATP-dependent carboxylation of N1' atom of biotin) and BCCP (biotin carboxyl carrier protein) domains of Acetyl-CoA carboxylase. This domain helps to mediate interactions between the BC and CT (carboxyltransferase) domains [1-3].	Domain
A	PF00364	Biotin-requiring enzyme (Biotin_lipoyl)	Biotin-requiring enzyme	This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.	Domain
A	PF08326	Acetyl-CoA carboxylase, central region (ACC_central)	Acetyl-CoA carboxylase, central region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	acetyl-CoA carboxylase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding CoA carboxylase activity acetyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity biotin binding amide binding organic acid binding vitamin binding carboxylic acid binding monocarboxylic acid binding sulfur compound binding cation binding metal ion binding identical protein binding protein binding	response to stimulus response to chemical response to xenobiotic stimulus organic substance metabolic process tricarboxylic acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process intracellular amino acid homeostasis cellular homeostasis response to stimulus response to chemical response to xenobiotic stimulus organic substance metabolic process tricarboxylic acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process intracellular amino acid homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis intracellular aspartate homeostasis organic acid transmembrane transport organic anion transport lactic acid secretion lactate transmembrane transport carboxylic acid transmembrane transport carboxylic acid transport secretion transport organic substance transport organic hydroxy compound transport acid secretion establishment of localization organic acid transport transmembrane transport lactate transport localization monocarboxylic acid transport plasma membrane lactate transport nucleoside bisphosphate metabolic process ribonucleoside bisphosphate biosynthetic process malonyl-CoA metabolic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process malonyl-CoA biosynthetic process phosphate-containing compound metabolic process organic substance biosynthetic process sulfur compound metabolic process thioester metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process primary metabolic process amide biosynthetic process nucleotide metabolic process organic cyclic compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate biosynthetic process organic cyclic compound biosynthetic process nucleoside phosphate biosynthetic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process ribose phosphate metabolic process purine nucleoside bisphosphate metabolic process ribonucleoside bisphosphate metabolic process thioester biosynthetic process cellular biosynthetic process purine nucleotide metabolic process acyl-CoA metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process purine nucleoside bisphosphate biosynthetic process amide metabolic process carbohydrate derivative biosynthetic process organonitrogen compound metabolic process nucleoside bisphosphate biosynthetic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process organophosphate metabolic process protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis regulation of localization regulation of biological process lipid storage biological regulation positive regulation of biological process lipid localization positive regulation of lipid localization maintenance of location regulation of lipid storage regulation of lipid localization macromolecule localization positive regulation of lipid storage multicellular organismal process multicellular organismal-level homeostasis energy homeostasis intracellular glutamate homeostasis system process striated muscle adaptation regulation of system process regulation of muscle hypertrophy regulation of cardiac muscle hypertrophy in response to stress muscle adaptation cardiac muscle adaptation regulation of response to stress response to stress cardiac muscle hypertrophy regulation of multicellular organismal process cardiac muscle hypertrophy in response to stress muscle hypertrophy regulation of muscle adaptation striated muscle hypertrophy regulation of muscle system process muscle system process regulation of cardiac muscle hypertrophy regulation of response to stimulus regulation of cardiac muscle adaptation muscle hypertrophy in response to stress fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process lipid biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process cellular lipid metabolic process monocarboxylic acid metabolic process lipid metabolic process glucose 6-phosphate metabolic process pentose-phosphate shunt pyridine-containing compound metabolic process pyridine nucleotide metabolic process nicotinamide nucleotide metabolic process generation of precursor metabolites and energy NADP metabolic process NADPH regeneration lipid modification fatty acid oxidation lipid oxidation regulation of growth regulation of developmental process developmental growth organ growth positive regulation of developmental process multicellular organism development regulation of organ growth regulation of heart growth anatomical structure development positive regulation of developmental growth positive regulation of heart growth system development developmental process heart development heart growth regulation of multicellular organismal development regulation of developmental growth positive regulation of organ growth animal organ development growth circulatory system development positive regulation of growth positive regulation of multicellular organismal process acetyl-CoA metabolic process regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process response to nutrient levels response to nutrient response to organic substance response to organic cyclic compound hexose transmembrane transport glucose import carbohydrate transport glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process glucose metabolic process negative regulation of small molecule metabolic process negative regulation of fatty acid beta-oxidation regulation of lipid metabolic process organic acid catabolic process cellular lipid catabolic process cellular catabolic process regulation of fatty acid oxidation monocarboxylic acid catabolic process cellular ketone metabolic process carboxylic acid catabolic process negative regulation of lipid catabolic process regulation of cellular ketone metabolic process regulation of fatty acid beta-oxidation regulation of lipid catabolic process regulation of fatty acid metabolic process small molecule catabolic process negative regulation of lipid metabolic process negative regulation of cellular catabolic process catabolic process negative regulation of fatty acid oxidation fatty acid beta-oxidation negative regulation of catabolic process lipid catabolic process negative regulation of fatty acid metabolic process regulation of catabolic process fatty acid catabolic process regulation of cellular catabolic process organic substance catabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol mitochondrial protein-containing complex protein-containing complex catalytic complex membrane-enclosed lumen mitochondrial matrix membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol mitochondrial protein-containing complex protein-containing complex catalytic complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen fatty acid beta-oxidation multienzyme complex organelle lumen mitochondrial fatty acid beta-oxidation multienzyme complex mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
A	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
A	IPR049074	Acetyl-CoA carboxylase, BT domain	Domain
A	IPR011764	Biotin carboxylation domain	Domain
A	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
A	IPR049076	Acetyl-CoA carboxylase	Family
A	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
A	IPR013537	Acetyl-CoA carboxylase, central domain	Domain
A	IPR011053	Single hybrid motif	Homologous Superfamily
A	IPR000089	Biotin/lipoyl attachment	Domain
A	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
A	IPR011761	ATP-grasp fold	Domain
A	IPR013815	ATP-grasp fold, subdomain 1	Homologous Superfamily
A	IPR005482	Biotin carboxylase, C-terminal	Domain
A	IPR005479	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Domain
A	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O00763	pancreatic ductal adenocarcinoma Insulin Resistance obesity disorder Sjogren syndrome breast cancer dermatomyositis lung adenocarcinoma malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma breast carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer pancreatic ductal adenocarcinoma Insulin Resistance obesity disorder Sjogren syndrome breast cancer dermatomyositis lung adenocarcinoma malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma breast carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant mesothelioma non-small cell lung carcinoma ovarian cancer psoriasis cervical cancer large cell medulloblastoma malignant colon neoplasm malignant pancreatic neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.