2DHA | pdb_00002dha

Solution structure of the second RNA recognition motif in Hypothetical protein FLJ201171

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Canonical RBD	8082150	4000236	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RNA-binding domain, RBD	8082151	3000110	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RRM_1_4	e2dhaA1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: RRM_1_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	FLJ20171 protein	RNA binding binding nucleic acid binding mRNA binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process multicellular organismal process regulation of cellular process sensory organ development epidermis development regulation of cell differentiation epithelial cell differentiation hair cell differentiation regulation of epithelial cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development regulation of mechanoreceptor differentiation regulation of inner ear auditory receptor cell differentiation neuron fate specification system development developmental process mechanoreceptor differentiation epithelium development regulation of biological process epidermal cell differentiation ear development neuron fate commitment inner ear receptor cell fate commitment nervous system development cell fate specification tissue development inner ear receptor cell differentiation generation of neurons cell fate commitment regulation of inner ear auditory receptor cell fate specification auditory receptor cell fate specification cellular developmental process regulation of developmental process regulation of epidermal cell differentiation auditory receptor cell fate commitment neurogenesis regulation of multicellular organismal process regulation of multicellular organismal development regulation of cell fate commitment animal organ development biological regulation inner ear auditory receptor cell differentiation regulation of inner ear receptor cell differentiation regulation of cell fate specification regulation of epidermis development regulation of neuron differentiation mRNA processing mRNA metabolic process regulation of primary metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process regulation of RNA splicing regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process	protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A	IPR000504	RNA recognition motif domain	Domain
A	IPR050666	Epithelial Splicing Regulatory	Family
A	IPR034427	ESRP1, RNA recognition motif 1	Domain
A	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q6NXG1	breast cancer ductal breast carcinoma in situ lung adenocarcinoma nonsyndromic genetic deafness pancreatic intraductal papillary-mucinous carcinoma pituitary cancer breast carcinoma interstitial cystitis lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida deafness, autosomal recessive 109 invasive ductal breast carcinoma non-small cell lung carcinoma breast cancer ductal breast carcinoma in situ lung adenocarcinoma nonsyndromic genetic deafness pancreatic intraductal papillary-mucinous carcinoma pituitary cancer breast carcinoma interstitial cystitis lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida deafness, autosomal recessive 109 invasive ductal breast carcinoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.