2DF7 | pdb_00002df7

Crystal structure of infectious bursal disease virus VP2 subviral particle

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
T	d2df7t_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
S	d2df7s_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
R	d2df7r_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
Q	d2df7q_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
P	d2df7p_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
O	d2df7o_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
N	d2df7n_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
M	d2df7m_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
L	d2df7l_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
K	d2df7k_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
J	d2df7j_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
I	d2df7i_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
H	d2df7h_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
G	d2df7g_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
F	d2df7f_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
E	d2df7e_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
D	d2df7d_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
C	d2df7c_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
B	d2df7b_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	automated matches	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)
A	d2df7a1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Birnaviridae-like VP	Birnavirus VP2	Gumboro virus (Infectious bursal disease virus ) [TaxId: 10995 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2B (2022-06-29)
A	SCOP2 Family	Birnaviridae-like VP	8027323	4001636	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8089990	3000918	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8039702	3000918	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	e2df7T1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
S	e2df7S1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
R	e2df7R1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
Q	e2df7Q1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
P	e2df7P1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
O	e2df7O1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
N	e2df7N1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
M	e2df7M1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
L	e2df7L1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
K	e2df7K1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
J	e2df7J1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
I	e2df7I1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
H	e2df7H1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
G	e2df7G1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
F	e2df7F1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
E	e2df7E1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
D	e2df7D1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
C	e2df7C1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
B	e2df7B1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: GPI	F:	ECOD (20:10:01)
A	e2df7A1	A: jelly-roll	X: Nucleoplasmin-like/VP (viral coat and capsid proteins)	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Birna_VP2	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
T	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
S	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
S	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
R	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
R	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
Q	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
Q	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
P	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
P	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
O	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
O	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
N	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
N	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
M	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
M	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
L	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
L	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
K	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
K	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
J	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
J	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
I	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
H	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
G	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
F	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
E	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
D	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.660	Mainly Beta	Sandwich	Jelly Rolls	icosahedral virus	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	structural polyprotein VP2	structural molecule activity peptidase activity serine hydrolase activity catalytic activity, acting on a protein serine-type peptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR043048	Birnavirus VP3, domain 1	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR002662	Birnavirus VP2 protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR025775	Birnavirus VP4 protease domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR002663	Birnavirus VP3 protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR043049	Birnavirus VP3, domain 2	Homologous Superfamily