2CSD
Crystal structure of Topoisomerase V (61 kDa fragment)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2csda2 | All alpha proteins | SAM domain-like | RuvA domain 2-like | Topoisomerase V repeat domain | Topoisomerase V | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
A | d2csda1 | All alpha proteins | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V, catalytic domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
B | d2csdb2 | All alpha proteins | SAM domain-like | RuvA domain 2-like | Topoisomerase V repeat domain | Topoisomerase V | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
B | d2csdb1 | All alpha proteins | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V, catalytic domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13404 | e2csdA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF13404 | ECOD (1.6) |
A | F_UNCLASSIFIED | e2csdA5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF14520 | e2csdA4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
A | PF21616 | e2csdA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21616 | ECOD (1.6) |
A | PF21872 | e2csdA3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21872 | ECOD (1.6) |
A | F_UNCLASSIFIED | e2csdA6 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF13404 | e2csdB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF13404 | ECOD (1.6) |
B | F_UNCLASSIFIED | e2csdB5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF14520 | e2csdB4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
B | PF21616 | e2csdB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21616 | ECOD (1.6) |
B | PF21872 | e2csdB3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21872 | ECOD (1.6) |
B | F_UNCLASSIFIED | e2csdB6 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.250.950 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 6.10.250.950 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain | |
PF21616 | Topoisomerase V, second (HhH)2 tandem domain (Topo-V_HhH_2_2nd) | Topoisomerase V, second (HhH)2 tandem domain | This domain is found in Topoisomerase V from Methanopyrus kandleri (Topo-V), is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities. Topo-V consists of an N-terminal topoisomerase domain followed by 12 tandem (HhH)2 doma ... | Domain | |
PF13412 | Winged helix-turn-helix DNA-binding (HTH_24) | Winged helix-turn-helix DNA-binding | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049334 | Topoisomerase V, second (HhH)2 tandem domain | Domain | |
IPR010994 | RuvA domain 2-like | Homologous Superfamily | |
IPR024065 | DNA topoisomerase V, catalytic domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain |