2CS4 | pdb_00002cs4

Solution structure of N-terminal domain of chromosome 12 open reading frame 2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2cs4a1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ras-binding domain, RBD	Ras association domain-containing protein 8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cs4a3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cs4a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ras-binding domain, RBD	8026863	4000380	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8039242	3000157	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RA_3	e2cs4A1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21712	Ras association domain-containing protein 8/10, RA domain (RASSF8-10_RA)	Ras association domain-containing protein 8/10, RA domain	This entry represents the Ras-associating domain from Ras association domain-containing protein 8/10 (RASSF8/10) which belong to the N-terminal RASSF7-10 protein family. They have an RA-domain at the N-terminal and lacks a conserved SARAH (Salvador/R ...	This entry represents the Ras-associating domain from Ras association domain-containing protein 8/10 (RASSF8/10) which belong to the N-terminal RASSF7-10 protein family. They have an RA-domain at the N-terminal and lacks a conserved SARAH (Salvador/RASSF/Hpo) motif adjacent to the RA domain that is found in members of the RASSF1-6 family. This domain has a beta-grasp ubiquitin-like fold with low sequence similarity to ubiquitin. RASSF8 has been described as a potential tumour suppressor and it may have a role in the regulation of cell-cell adhesion and cell growth. RASSF10 functions as a tumour suppressor [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein C12orf2	-	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000159	Ras-associating domain	Domain
A	IPR048944	Ras association domain-containing protein 8, RA domain	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A	IPR048945	Ras association domain-containing protein 8/10, RA domain	Domain
A	IPR033593	N-terminal RASSF family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8NHQ8	small cell lung carcinoma atopic eczema interstitial cystitis lung cancer medulloblastoma ovarian cancer Pick disease atrial fibrillation large cell medulloblastoma lung carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma small cell carcinoma ulcerative colitis glioblastoma small cell lung carcinoma atopic eczema interstitial cystitis lung cancer medulloblastoma ovarian cancer Pick disease atrial fibrillation large cell medulloblastoma lung carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma small cell carcinoma ulcerative colitis glioblastoma lung adenocarcinoma malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Small cell carcinoma of lung

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.