2CQQ | pdb_00002cqq

Solution Structure of RSGI RUH-037, a myb DNA-binding domain in human cDNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2cqqa1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	Myb/SANT domain	DnaJ homolog subfamily C member 1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cqqa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cqqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Myb/SANT domain	8002299	4000317	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8057550	3000001	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Myb_DNA-binding_1	e2cqqA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23082	Myb-like DNA-binding domain (Myb_DNA-binding_2)	Myb-like DNA-binding domain	This is the myb DNA-binding domain found in human DnaJ homolog subfamily C member 1 (DNAJC1) and similar sequences from animals and plants. This domain adopts a three helical bundle structure.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DnaJ homolog subfamily C member 1	DNA binding binding nucleic acid binding ATPase activator activity molecular function activator activity molecular function regulator activity ATPase regulator activity protein binding protein-folding chaperone binding	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of localization establishment of protein localization regulation of cellular process regulation of protein localization protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of localization establishment of protein localization regulation of cellular process regulation of protein localization transport protein localization to extracellular region localization regulation of secretion by cell secretion by cell intracellular protein localization regulation of biological process regulation of transport secretion biological regulation regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion protein transport macromolecule localization regulation of biosynthetic process regulation of protein metabolic process regulation of macromolecule metabolic process translation protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process negative regulation of proteolysis negative regulation of metabolic process negative regulation of biological process regulation of proteolysis proteolysis negative regulation of cellular process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process	cellular anatomical structure endomembrane system membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cell periphery cellular anatomical structure endomembrane system membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cell periphery plasma membrane endoplasmic reticulum cytoplasm organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR052606	DnaJ domain-containing protein	Family
A	IPR018253	DnaJ domain, conserved site	Conserved Site
A	IPR036869	Chaperone J-domain superfamily	Homologous Superfamily
A	IPR017884	SANT domain	Domain
A	IPR001623	DnaJ domain	Domain
A	IPR001005	SANT/Myb domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q96KC8	melanoma pilocytic astrocytoma prostate carcinoma attention deficit hyperactivity disorder, inattentive type breast cancer Emery-Dreifuss muscular dystrophy juvenile dermatomyositis malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor breast carcinoma glioblastoma melanoma pilocytic astrocytoma prostate carcinoma attention deficit hyperactivity disorder, inattentive type breast cancer Emery-Dreifuss muscular dystrophy juvenile dermatomyositis malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor breast carcinoma glioblastoma malignant ependymoma ovarian cancer Pick disease primitive neuroectodermal tumor benign prostatic hyperplasia cutaneous melanoma invasive ductal breast carcinoma malignant glioma myopathy ovarian carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.