2CP9 | pdb_00002cp9

Solution structure of RSGI RUH-042, a UBA domain from human mitochondrial elongation factor Ts

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2cp9a1	All alpha proteins	RuvA C-terminal domain-like	UBA-like	TS-N domain	Elongation factor Ts (EF-Ts), N-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cp9a3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2cp9a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TS-N domain	8026805	4002887	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	UBA-like	8039184	3001235	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UBA	e2cp9A1	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: UBA	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF25025	Elongation factor Ts, mitochondrial, N-terminal (EF-Ts_N)	Elongation factor Ts, mitochondrial, N-terminal	This domain is found at the N-terminal end of the mitochondrial Elongation factor Ts from Bos taurus (EF-Ts), which associates with the EF-Tu. GDP complex and induces the exchange of GDP to GTP. This domain consists of helical segments [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Elongation factor Ts, mitochondrial	translation factor activity translation elongation factor activity RNA binding binding nucleic acid binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process translational elongation metabolic process cellular process mitochondrial translational elongation macromolecule metabolic process protein metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001816	Translation elongation factor EFTs/EF1B	Family
A	IPR014039	Translation elongation factor EFTs/EF1B, dimerisation	Domain
A	IPR036402	Elongation factor Ts, dimerisation domain superfamily	Homologous Superfamily
A	IPR018101	Translation elongation factor Ts, conserved site	Conserved Site
A	IPR009060	UBA-like superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P43897	fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 cardiomyopathy adenoma dilated cardiomyopathy Leigh syndrome malignant glioma osteosarcoma endogenous depression hypertrophic cardiomyopathy lung cancer medulloblastoma psoriasis Combined Oxidative Phosphorylation Deficiency 3 intellectual disability malignant ependymoma fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3 cardiomyopathy adenoma dilated cardiomyopathy Leigh syndrome malignant glioma osteosarcoma endogenous depression hypertrophic cardiomyopathy lung cancer medulloblastoma psoriasis Combined Oxidative Phosphorylation Deficiency 3 intellectual disability malignant ependymoma rhabdomyolysis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.