2C0Z

The 1.6 A resolution crystal structure of NovW: a 4-keto-6-deoxy sugar epimerase from the novobiocin biosynthetic gene cluster of Streptomyces spheroides

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2c0za1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	dTDP-sugar isomerase	Novobiocin biosynthesis protein NovW	(Streptomyces niveus NCIMB 11891 ) [TaxId: 1352941 ],	SCOPe (2.08)
A	d2c0za2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces niveus NCIMB 11891 ) [TaxId: 1352941 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	dTDP-sugar isomerase	8026674	4002863	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RmlC-like cupins	8039053	3001825	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	dTDP_sugar_isom	e2c0zA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: dTDP_sugar_isom	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP_sugar_isom)	dTDP-4-dehydrorhamnose 3,5-epimerase	This family catalyse the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	NOVW	isomerase activity catalytic activity racemase and epimerase activity dTDP-4-dehydrorhamnose 3,5-epimerase activity racemase and epimerase activity, acting on carbohydrates and derivatives	ether metabolic process glycosyl compound metabolic process organic hydroxy compound metabolic process organonitrogen compound biosynthetic process coumarin metabolic process carbohydrate derivative metabolic process secondary metabolic process antibiotic biosynthetic process ether biosynthetic process antibiotic metabolic process organic substance metabolic process coumarin biosynthetic process secondary metabolite biosynthetic process organic substance biosynthetic process ether metabolic process glycosyl compound metabolic process organic hydroxy compound metabolic process organonitrogen compound biosynthetic process coumarin metabolic process carbohydrate derivative metabolic process secondary metabolic process antibiotic biosynthetic process ether biosynthetic process antibiotic metabolic process organic substance metabolic process coumarin biosynthetic process secondary metabolite biosynthetic process organic substance biosynthetic process small molecule metabolic process amide metabolic process carbohydrate derivative biosynthetic process phenylpropanoid metabolic process organonitrogen compound metabolic process glycosyl compound biosynthetic process glycoside metabolic process amide biosynthetic process phenylpropanoid biosynthetic process novobiocin metabolic process glycoside biosynthetic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process organic hydroxy compound biosynthetic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process metabolic process novobiocin biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000888	dTDP-4-dehydrorhamnose 3,5-epimerase-like	Family
A	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.