2BRY | pdb_00002bry

Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e2bryB2	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: UNK_F_TYPE	ECOD (1.6)
B	FAD_binding_3_1st	e2bryB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: FAD_binding_3_1st	ECOD (1.6)
A	UNK_F_TYPE	e2bryA2	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: UNK_F_TYPE	ECOD (1.6)
A	FAD_binding_3_1st	e2bryA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: FAD_binding_3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.2.0)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF25413	Mical, Rossman domain (Rossman_Mical)	Mical, Rossman domain	This domain is found towards the N terminus of a group of animal of monooxygenases that play a crucial role in the regulation of the actin cytoskeleton. These enzymes promote the depolymerisation of F-actin by oxidising specific methionine residues o ...	This domain is found towards the N terminus of a group of animal of monooxygenases that play a crucial role in the regulation of the actin cytoskeleton. These enzymes promote the depolymerisation of F-actin by oxidising specific methionine residues on actin, leading to the formation of methionine -sulfoxide, which results in actin filament disassembly and prevents repolymerisation. This domain adopts a Rossman fold.	Domain
A, B	PF01494	FAD binding domain (FAD_binding_3)	FAD binding domain	This domain is involved in FAD binding in a number of enzymes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	NEDD9 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS	small GTPase binding protein binding binding enzyme binding GTPase binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding monooxygenase activity small GTPase binding protein binding binding enzyme binding GTPase binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding monooxygenase activity oxidoreductase activity catalytic activity F-actin monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen SH3 domain binding protein domain specific binding kinase binding protein kinase binding cytoskeletal protein binding actin binding cation binding metal ion binding	sulfur compound metabolic process metabolic process cellular process sulfur oxidation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process sulfur compound metabolic process metabolic process cellular process sulfur oxidation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death cellular component disassembly actin polymerization or depolymerization actin cytoskeleton organization protein-containing complex organization actin filament organization protein-containing complex disassembly actin filament depolymerization cellular component organization organelle organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization protein depolymerization cytoskeleton organization regulation of localization regulated exocytosis transport secretion regulation of transport export from cell regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport regulation of secretion regulation of regulated secretory pathway localization secretion by cell regulation of secretion by cell exocytosis regulation of exocytosis	midbody cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane axon synapse hippocampal mossy fiber expansion neuron projection axon terminus plasma membrane bounded cell projection midbody cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane axon synapse hippocampal mossy fiber expansion neuron projection axon terminus plasma membrane bounded cell projection hippocampal mossy fiber presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intercellular bridge endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane polymeric cytoskeletal fiber actin filament intracellular membraneless organelle actin cytoskeleton cytoskeleton membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex cilium ciliary basal body microtubule organizing center microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A, B	IPR050540	F-actin Monooxygenase Mical	Family
A, B	IPR001715	Calponin homology domain	Domain
A, B	IPR002938	FAD-binding domain	Domain
A, B	IPR022735	bMERB domain	Domain
A, B	IPR001781	Zinc finger, LIM-type	Domain
A, B	IPR036872	CH domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.