2BM9 | pdb_00002bm9

cmcI-N160 in complex with SAM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2bm9b_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
F	d2bm9f_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
E	d2bm9e_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
D	d2bm9d_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
C	d2bm9c_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
A	d2bm9a_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Methyltrans_SAM, Methyltransf_25	e2bm9B1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)
F	Methyltrans_SAM, Methyltransf_25	e2bm9F1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)
E	Methyltrans_SAM, Methyltransf_25	e2bm9E1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)
D	Methyltrans_SAM, Methyltransf_25	e2bm9D1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)
C	Methyltrans_SAM, Methyltransf_25	e2bm9C1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)
A	Methyltrans_SAM, Methyltransf_25	e2bm9A1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
F	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
E	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04989	Rhamnosyl O-methyltransferase/CmcI (RMNT_CmcI)	Rhamnosyl O-methyltransferase/CmcI	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	CEPHALOSPORIN HYDROXYLASE CMCI	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007072	Rhamnosyl O-methyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.