2AR7 | pdb_00002ar7

Crystal structure of human adenylate kinase 4, AK4


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyP-loop nucleotide/nucleoside kinase-like 8058342 3002021 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyP-loop nucleotide/nucleoside kinase-like 8058342 3002021 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be2ar7B1 A: HTHX: HTHH: winged helix domainT: MATH_2F:ECOD (20:10:01)
Ae2ar7A1 A: Globin-likeX: Globin-likeH: Globin-likeT: tRNA_int_endo_NF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00406Adenylate kinase (ADK)Adenylate kinaseDomain
A, B
PF05191Adenylate kinase, active site lid (ADK_lid)Adenylate kinase, active site lidComparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues are resp ...Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain, is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Adenylate kinase 4