2APO
Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2apoa1 | All beta proteins | PUA domain-like | PUA domain-like | PUA domain | Pseudouridine synthase II TruB, C-terminal domain | (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
A | d2apoa2 | Alpha and beta proteins (a+b) | Pseudouridine synthase | Pseudouridine synthase | Pseudouridine synthase II TruB | Pseudouridine synthase II TruB | (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
B | d2apob_ | Small proteins | Rubredoxin-like | Nop10-like SnoRNP | Nucleolar RNA-binding protein Nop10-like | Ribosome biogenesis protein Nop10 | (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Pseudouridine synthase II TruB | 8024857 | 4003455 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PUA domain | 8024854 | 4003536 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Pseudouridine synthase | 8037236 | 3001360 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PUA domain-like | 8037233 | 3001015 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Nucleolar RNA-binding protein Nop10-like | 8024858 | 4000515 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Nop10-like SnoRNP Znf-like | 8037237 | 3000486 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PUA | e2apoA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PUA | ECOD (1.6) |
A | TruB_N | e2apoA2 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: TruB_N | ECOD (1.6) |
B | Nop10p | e2apoB1 | A: few secondary structure elements | X: Rubredoxin-like | H: Nucleolar RNA-binding protein Nop10-like (From Topology) | T: Nucleolar RNA-binding protein Nop10-like | F: Nop10p | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
A | 3.30.70.3190 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 2.20.28.40 | Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | H/ACA ribonucleoprotein complex, subunit Nop10 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08068 | DKCLD (NUC011) domain (DKCLD) | DKCLD (NUC011) domain | This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like proteins [1]. | Domain | |
PF16198 | tRNA pseudouridylate synthase B C-terminal domain (TruB_C_2) | tRNA pseudouridylate synthase B C-terminal domain | - | Family | |
PF01509 | TruB family pseudouridylate synthase (N terminal domain) (TruB_N) | TruB family pseudouridylate synthase (N terminal domain) | - | Family | |
PF01472 | PUA domain (PUA) | PUA domain | - | Family | |
PF04135 | Nucleolar RNA-binding protein, Nop10p family (Nop10p) | Nucleolar RNA-binding protein, Nop10p family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
IPR004521 | Uncharacterised domain CHP00451 | Domain | |
IPR002501 | Pseudouridine synthase II, N-terminal | Domain | |
IPR026326 | Probable tRNA pseudouridine synthase B, archaeal | Family | |
IPR032819 | tRNA pseudouridylate synthase B, C-terminal | Domain | |
IPR036974 | PUA domain superfamily | Homologous Superfamily | |
IPR012960 | Dyskerin-like | Domain | |
IPR002478 | PUA domain | Domain | |
IPR004802 | tRNA pseudouridine synthase B family | Family | |
IPR023532 | H/ACA ribonucleoprotein complex subunit Nop10 , archaeal-type | Family | |
IPR007264 | H/ACA ribonucleoprotein complex, subunit Nop10 | Family | |
IPR036756 | H/ACA ribonucleoprotein complex, subunit Nop10 superfamily | Homologous Superfamily |