2AAM

Crystal structure of a putative glycosidase (tm1410) from thermotoga maritima at 2.20 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2aama1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d2aamb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
C	d2aamc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
D	d2aamd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
E	d2aame_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
F	d2aamf_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	TM1410-like	Hypothetical protein TM1410	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TM1410-like	8024442	4002318	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	(Trans)glycosidases	8036821	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_114	e2aamA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)
B	Glyco_hydro_114	e2aamB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)
C	Glyco_hydro_114	e2aamC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)
D	Glyco_hydro_114	e2aamD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)
E	Glyco_hydro_114	e2aamE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)
F	Glyco_hydro_114	e2aamF1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_114	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
E	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03537	Glycoside-hydrolase family GH114 (Glyco_hydro_114)	Glycoside-hydrolase family GH114	This family is recognised as a glycosyl-hydrolase family, number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare enzyme. It is proposed to be TIM-barrel, the most common structure amongst the catalytic domains of glycosyl-hydrolases [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR004352	Glycoside-hydrolase family GH114, TIM-barrel domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016063	TM1410 putative glycosidase	Family
A, B, C, D, E A, B, C, D, E, F	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016062	Hypothetical protein TM1410-related	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.