Annotations: 29UG

Structure of MKLN1-RANBP9-TWA1 CTLH subcomplex bound to ZMYND19 substrate

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], C [auth E]	Zinc finger MYND domain-containing protein 19	-	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm synapse cell junction
B, F [auth A]	Muskelin	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process regulation of localization import into cell regulation of biological process regulation of cellular component organization regulation of cellular process receptor internalization regulation of transport transport regulation of receptor-mediated endocytosis biological regulation cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process regulation of localization import into cell regulation of biological process regulation of cellular component organization regulation of cellular process receptor internalization regulation of transport transport regulation of receptor-mediated endocytosis biological regulation regulation of vesicle-mediated transport regulation of receptor internalization establishment of localization vesicle-mediated transport cellular component organization localization cellular component organization or biogenesis endocytosis receptor-mediated endocytosis regulation of endocytosis organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization cellular response to stimulus response to stimulus signaling signal transduction cell communication catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis neurotransmitter receptor transport postsynaptic membrane to endosome receptor localization to synapse	symmetric synapse postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane synaptic membrane postsynaptic specialization of symmetric synapse postsynaptic specialization membrane of symmetric synapse cell periphery postsynapse cellular anatomical structure neuron to neuron synapse organelle symmetric synapse postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane synaptic membrane postsynaptic specialization of symmetric synapse postsynaptic specialization membrane of symmetric synapse cell periphery postsynapse cellular anatomical structure neuron to neuron synapse organelle postsynaptic membrane cell junction plasma membrane region cell cortex intracellular anatomical structure cytoplasm cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex endosome membrane membrane-bounded organelle intracellular vesicle postsynaptic endosome endomembrane system intracellular organelle bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle endosome intracellular membrane-bounded organelle cytoplasmic vesicle membrane postsynaptic endosome membrane organelle membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen GABA-ergic synapse ruffle cell projection cell leading edge plasma membrane bounded cell projection
D [auth C]	Ran-binding protein 9	small GTPase binding protein binding binding enzyme binding GTPase binding protein-macromolecule adaptor activity molecular adaptor activity	amyloid precursor protein catabolic process regulation of biological process regulation of cellular process positive regulation of protein metabolic process regulation of protein metabolic process biological regulation positive regulation of biological process primary metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process metabolic process cellular process amyloid precursor protein catabolic process regulation of biological process regulation of cellular process positive regulation of protein metabolic process regulation of protein metabolic process biological regulation positive regulation of biological process primary metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process metabolic process cellular process positive regulation of macromolecule metabolic process protein metabolic process macromolecule metabolic process positive regulation of amyloid precursor protein catabolic process amyloid precursor protein metabolic process regulation of metabolic process positive regulation of cellular process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of cellular process signal transduction regulation of signaling negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process organelle organization cytoskeleton organization protein polymerization microtubule cytoskeleton organization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation microtubule-based process supramolecular fiber organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cytoskeleton membraneless organelle microtubule associated complex intracellular membraneless organelle microtubule cytoskeleton nuclear body
E [auth D]	Glucose-induced degradation protein 8 homolog	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity protein-macromolecule adaptor activity molecular adaptor activity	regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of Wnt signaling pathway signal transduction Wnt signaling pathway positive regulation of canonical Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure cell junction intracellular anatomical structure cytoplasm cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure cell junction intracellular anatomical structure cytoplasm cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth F], C [auth E]	IPR002893	Zinc finger, MYND-type	Domain
A [auth F], C [auth E]	IPR032978	Zinc finger MYND domain-containing protein 19	Family
A [auth F], C [auth E]	IPR044925	His-Me finger superfamily	Homologous Superfamily
A [auth F], C [auth E]	IPR003615	HNH nuclease	Domain
B, F [auth A]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
B, F [auth A]	IPR006595	CTLH, C-terminal LisH motif	Domain
B, F [auth A]	IPR052456	CTLH complex component protein	Family
B, F [auth A]	IPR006652	Kelch repeat type 1	Repeat
B, F [auth A]	IPR011043	Galactose oxidase/kelch, beta-propeller	Homologous Superfamily
B, F [auth A]	IPR006594	LIS1 homology motif	Conserved Site
B, F [auth A]	IPR010565	Muskelin, N-terminal	Domain
B, F [auth A]	IPR015915	Kelch-type beta-propeller	Homologous Superfamily
B, F [auth A]	IPR056737	Attractin/MKLN-like, beta-propeller domain	Domain
D [auth C]	IPR035782	Ran binding protein 9/10, SPRY domain	Domain
D [auth C]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
D [auth C]	IPR006595	CTLH, C-terminal LisH motif	Domain
D [auth C]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
D [auth C]	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
D [auth C]	IPR006594	LIS1 homology motif	Conserved Site
D [auth C]	IPR013144	CRA domain	Domain
D [auth C]	IPR003877	SPRY domain	Domain
D [auth C]	IPR001870	B30.2/SPRY domain	Domain
D [auth C]	IPR050618	Ubiquitination and Signaling Pathway Regulator	Family
E [auth D]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
E [auth D]	IPR050618	Ubiquitination and Signaling Pathway Regulator	Family
E [auth D]	IPR006595	CTLH, C-terminal LisH motif	Domain
E [auth D]	IPR006594	LIS1 homology motif	Conserved Site
E [auth D]	IPR013144	CRA domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth F], C [auth E]	: Q96E35	osteosarcoma ovarian cancer
B, F [auth A]	: Q9UL63	androgenetic alopecia glioblastoma malignant pancreatic neoplasm neoplasm ovarian cancer pilocytic astrocytoma astrocytic tumor large cell medulloblastoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma tuberculosis cutaneous melanoma malignant ependymoma myopathy androgenetic alopecia glioblastoma malignant pancreatic neoplasm neoplasm ovarian cancer pilocytic astrocytoma astrocytic tumor large cell medulloblastoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma tuberculosis cutaneous melanoma malignant ependymoma myopathy osteosarcoma Pick disease
D [auth C]	: Q96S59	breast cancer invasive ductal breast carcinoma osteosarcoma psoriasis breast carcinoma lung adenocarcinoma Pick disease schizophrenia esophageal adenocarcinoma medulloblastoma plasma cell myeloma spina bifida
E [auth D]	: Q9NWU2	ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida

29UG | pdb_000029ug

Structure of MKLN1-RANBP9-TWA1 CTLH subcomplex bound to ZMYND19 substrate

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation