28YJ | pdb_000028yj

Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00008EGF-like domain (EGF)EGF-like domainThere is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ...There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Domain
A, B, C, D
PF23344ZP-N domain (ZP-N)ZP-N domainThis entry represents the N-terminal structural domain of the zona pellucida domain as defined by sequence. Domain
A, B, C, D
PF00100ZP-C domain (Zona_pellucida)ZP-C domainThis entry represents the ZP-C domain that is the C-terminal structural domain that composes the zona pellucida domain that was originally defined by sequence. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Uromodulin- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR055355ZP-C domainDomain
A, B, C, D
IPR001507Zona pellucida domainDomain
A, B, C, D
IPR042235Zona pellucida, ZP-C domainHomologous Superfamily
A, B, C, D
IPR000742EGF-like domainDomain
A, B, C, D
IPR055356ZP-N domainDomain