Annotations: 28OP

Structure of the human inner kinetochore CCAN and CENP-C bound to DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth M]	SCOP2B Superfamily	Ras-like P-loop GTPases	8092489	3002022	SCOP2B (2022-06-29)
B [auth S]	SCOP2B Superfamily	Core histone-like	8058042	3001387	SCOP2B (2022-06-29)
G [auth X]	SCOP2B Superfamily	Core histone-like	8053222	3001387	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth S]	PF15630	CENP-S protein (CENP-S)	CENP-S protein	CENP-S is a family of vertebral and fungal kinetochore component proteins. CENP-S complexes with CENP-X to form a stable CENP-T-W-S-X heterotetramer.	Domain
C [auth T]	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain
I [auth H]	PF05837	Centromere protein H (CENP-H) (CENP-H)	Centromere protein H (CENP-H)	This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynami ...	This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynamic function during mitosis has not yet been clearly determined. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle. CENP-H may play a role in kinetochore organisation and function throughout the cell cycle [1]. This the C-terminus of the region, which is conserved from fungi to humans.	Domain
L	PF13092	Centromere protein L (CENP-L)	Centromere protein L	-	Family
M [auth N]	PF05238	Centromere protein Chl4/mis15/CENP-N (CENP-N)	Centromere protein Chl4/mis15/CENP-N	-	Family
N [auth O]	PF09496	Cenp-O kinetochore centromere component (CENP-O)	Cenp-O kinetochore centromere component	-	Family
O [auth P]	PF13096	CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P (CENP-P)	CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P	-	Family
P [auth Q]	PF13094	CENP-Q, a CENPA-CAD centromere complex subunit (CENP-Q)	CENP-Q, a CENPA-CAD centromere complex subunit	-	Family
G [auth X]	PF09415	CENP-S associating Centromere protein X (CENP-X)	CENP-S associating Centromere protein X	The centromere, essential for faithful chromosome segregation during mitosis, has a network of constitutive centromere-associated (CCAN) proteins associating with it during mitosis. So far in vertebrates at least 15 centromere proteins have been iden ...	The centromere, essential for faithful chromosome segregation during mitosis, has a network of constitutive centromere-associated (CCAN) proteins associating with it during mitosis. So far in vertebrates at least 15 centromere proteins have been identified, which are divided into several subclasses based on functional and biochemical analyses. These provide a platform for the formation of a functional kinetochore during mitosis. CENP-S is one that does not associate with the CENP-H-containing complex but rather interacts with CENP-X to form a stable assembly of outer kinetochore proteins that functions downstream of other components of the CCAN. This complex may directly allow efficient and stable formation of the outer kinetochore on the CCAN platform.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth M]	Centromere protein M	-	cellular process cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B [auth S]	Centromere protein S	DNA binding binding nucleic acid binding chromatin binding protein heterodimerization activity protein binding protein dimerization activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process macromolecule metabolic process replication fork processing DNA repair cell division sexual reproduction homologous recombination reproductive process resolution of meiotic recombination intermediates meiotic cell cycle process cellular component organization meiosis I meiotic nuclear division cell cycle cellular component organization or biogenesis reciprocal homologous recombination cell cycle process meiotic cell cycle DNA recombination organelle fission reciprocal meiotic recombination nuclear division organelle organization meiosis I cell cycle process chromosome segregation interstrand cross-link repair regulation of cellular process regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of biological process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process macromolecule modification post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle FANCM-MHF complex cytoplasm cytosol Fanconi anaemia nuclear complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin
C [auth T]	Methylated-DNA--protein-cysteine methyltransferase,Centromere protein T	DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid cation binding ion binding metal ion binding small molecule binding protein heterodimerization activity protein binding protein dimerization activity	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death methylation cell cycle mitotic cell cycle organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis cell division chromosome segregation cell cycle process	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome chromosomal region kinetochore membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol nuclear body
D [auth U]	Centromere protein U	-	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen centrosome microtubule organizing center cytoskeleton centriolar satellite microtubule cytoskeleton
E [auth V]	DNA (59-MER)	-	-	-
F [auth W]	Centromere protein W	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis cell cycle mitotic cell cycle cell division chromosome segregation cell cycle process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix intracellular membraneless organelle nucleolus membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix intracellular membraneless organelle nucleolus membraneless organelle chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome nucleoplasm
H [auth Y]	DNA (61-MER)	-	-	-
I [auth H]	Centromere protein H	binding kinetochore binding	microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component biogenesis cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization chromosome segregation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
K	Centromere protein K	-	mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cellular process cellular component organization or biogenesis cell cycle mitotic nuclear division organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process organelle assembly protein-containing complex organization membraneless organelle assembly cellular component biogenesis cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
L	Centromere protein L	-	cellular process cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
M [auth N]	Centromere protein N	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
N [auth O]	Centromere protein O	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis cell cycle organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region condensed chromosome, centromeric region Mis6-Sim4 complex supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen
O [auth P]	Centromere protein P	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
P [auth Q]	Centromere protein Q	-	metaphase chromosome alignment localization chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process regulation of localization regulation of biological process regulation of protein localization protein localization to chromosome, centromeric region biological regulation metaphase chromosome alignment localization chromosome localization organelle localization nuclear chromosome segregation cellular process cell cycle chromosome segregation cell cycle process regulation of localization regulation of biological process regulation of protein localization protein localization to chromosome, centromeric region biological regulation positive regulation of biological process positive regulation of protein localization to kinetochore protein localization to kinetochore regulation of protein localization to kinetochore protein localization to chromosome protein localization to condensed chromosome macromolecule localization protein localization to organelle positive regulation of protein localization intracellular protein localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
R [auth C]	Centromere protein C,Methylated-DNA--protein-cysteine methyltransferase	DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA binding binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid cation binding ion binding metal ion binding small molecule binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding centromeric DNA binding identical protein binding protein binding	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death methylation cell cycle mitotic cell cycle organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis mitotic metaphase chromosome alignment metaphase chromosome alignment localization chromosome localization organelle localization mitotic sister chromatid segregation chromosome segregation cell cycle process mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation cell division meiotic chromosome segregation sexual reproduction reproductive process attachment of meiotic spindle microtubules to kinetochore meiotic cell cycle process meiotic metaphase I homologous chromosome alignment meiosis I meiotic nuclear division meiotic cell cycle spindle attachment to meiosis I kinetochore meiosis I cell cycle process meiotic metaphase chromosome alignment homologous chromosome segregation	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome chromosomal region kinetochore membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol nuclear body pericentric heterochromatin chromatin heterochromatin
G [auth X]	Centromere protein X	DNA binding binding nucleic acid binding	DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process replication fork processing organelle assembly protein-containing complex organization chromosome organization DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process replication fork processing organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis cell division sexual reproduction homologous recombination reproductive process resolution of meiotic recombination intermediates meiotic cell cycle process meiosis I meiotic nuclear division cell cycle reciprocal homologous recombination cell cycle process meiotic cell cycle DNA recombination organelle fission reciprocal meiotic recombination nuclear division meiosis I cell cycle process chromosome segregation cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress interstrand cross-link repair DNA repair regulation of cellular process regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of biological process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process macromolecule modification post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle FANCM-MHF complex cytoplasm cytosol Fanconi anaemia nuclear complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin
Q [auth R]	Centromere protein R	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cell adhesion cell division cell cycle chromosome segregation cell cycle process apoptotic process cell death programmed cell death cellular response to stimulus response to stimulus signaling signal transduction cell communication	cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
J [auth I]	Centromere protein I	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis mitotic nuclear division organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cell cycle chromosome segregation cell cycle process developmental process reproductive process sex differentiation developmental process involved in reproduction	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle inner kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth M]	IPR020987	Centromere protein Cenp-M	Family
A [auth M]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth S]	IPR009072	Histone-fold	Homologous Superfamily
B [auth S]	IPR029003	CENP-S/Mhf1	Family
C [auth T]	IPR008332	Methylguanine DNA methyltransferase, ribonuclease-like domain	Domain
C [auth T]	IPR036217	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Homologous Superfamily
C [auth T]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C [auth T]	IPR036631	Methylated DNA-protein cysteine methyltransferase domain superfamily	Homologous Superfamily
C [auth T]	IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Domain
C [auth T]	IPR001497	Methylated-DNA-[protein]-cysteine S-methyltransferase, active site	Active Site
C [auth T]	IPR009072	Histone-fold	Homologous Superfamily
C [auth T]	IPR032373	Centromere kinetochore component CENP-T, N-terminal domain	Domain
C [auth T]	IPR028255	Centromere protein T	Family
C [auth T]	IPR035425	CENP-T/Histone H4, histone fold	Domain
D [auth U]	IPR025214	Centromere protein U	Family
F [auth W]	IPR028847	Centromere protein W	Family
F [auth W]	IPR009072	Histone-fold	Homologous Superfamily
F [auth W]	IPR052484	Centromere Protein W/WIP1	Family
I [auth H]	IPR040034	Centromere protein H	Family
I [auth H]	IPR008426	Centromere protein H, C-terminal	Domain
K	IPR020993	Centromere protein Cenp-K	Family
L	IPR025204	Centromere subunit L	Family
M [auth N]	IPR052011	Centromere-associated NAC/CAD complex protein	Family
M [auth N]	IPR007902	Centromere protein Chl4/mis15/CENP-N	Family
N [auth O]	IPR018464	Centromere protein O	Family
O [auth P]	IPR027801	Centromere protein P	Family
P [auth Q]	IPR025212	Centromere protein Q	Family
R [auth C]	IPR008332	Methylguanine DNA methyltransferase, ribonuclease-like domain	Domain
R [auth C]	IPR036217	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Homologous Superfamily
R [auth C]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
R [auth C]	IPR036631	Methylated DNA-protein cysteine methyltransferase domain superfamily	Homologous Superfamily
R [auth C]	IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Domain
R [auth C]	IPR001497	Methylated-DNA-[protein]-cysteine S-methyltransferase, active site	Active Site
R [auth C]	IPR028052	Kinetochore assembly subunit CENP-C, N-terminal domain	Domain
R [auth C]	IPR025974	Mif2/CENP-C cupin domain	Domain
R [auth C]	IPR028386	Centromere protein C/Mif2/cnp3	Family
R [auth C]	IPR028931	CENP-C, middle DNMT3B-binding domain	Domain
R [auth C]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
R [auth C]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
G [auth X]	IPR018552	Centromere protein X	Family
Q [auth R]	IPR009601	Centromere protein R	Family
J [auth I]	IPR012485	Centromere protein I	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth M]	: Q9NSP4	adrenal cortex carcinoma ductal breast carcinoma in situ invasive ductal breast carcinoma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm breast cancer hepatocellular carcinoma lung cancer osteosarcoma primitive neuroectodermal tumor
B [auth S]	: Q8N2Z9	breast carcinoma lung cancer osteosarcoma psoriasis estrogen-receptor negative breast cancer malignant ependymoma ovarian cancer invasive ductal breast carcinoma medulloblastoma prostate carcinoma
C [auth T]	: Q96BT3	malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm anorexia nervosa peripheral neuropathy bone disease spinal cord disease malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm anorexia nervosa peripheral neuropathy bone disease spinal cord disease osteosarcoma astrocytic tumor precancerous condition brain cancer head and neck squamous cell carcinoma oligodendroglioma peripheral nervous system disease brain disease tuberculosis cancer glioma metabolic syndrome X psoriasis osteosarcoma Pick disease
D [auth U]	: Q71F23	mucocutaneous lymph node syndrome medulloblastoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma plasma cell myeloma breast cancer Sjogren syndrome endometriosis IgA glomerulonephritis large cell medulloblastoma malignant colon neoplasm malignant mesothelioma oligodendroglioma mucocutaneous lymph node syndrome medulloblastoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adrenal cortex carcinoma plasma cell myeloma breast cancer Sjogren syndrome endometriosis IgA glomerulonephritis large cell medulloblastoma malignant colon neoplasm malignant mesothelioma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor primitive neuroectodermal tumor breast carcinoma glioblastoma interstitial cystitis lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer atypical teratoid rhabdoid tumor psoriasis ductal breast carcinoma in situ hepatocellular carcinoma invasive ductal breast carcinoma lung cancer malignant glioma
F [auth W]	: Q5EE01	psoriasis adrenal cortex carcinoma breast cancer glioblastoma interstitial cystitis malignant glioma ovarian cancer pituitary cancer ulcerative colitis androgenetic alopecia ductal breast carcinoma in situ heart disease large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma psoriasis adrenal cortex carcinoma breast cancer glioblastoma interstitial cystitis malignant glioma ovarian cancer pituitary cancer ulcerative colitis androgenetic alopecia ductal breast carcinoma in situ heart disease large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor endometriosis hepatocellular carcinoma lung adenocarcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm
I [auth H]	: Q9H3R5	adrenal cortex carcinoma glioblastoma malignant glioma non-small cell lung carcinoma atypical teratoid rhabdoid tumor large cell medulloblastoma medulloblastoma osteosarcoma colorectal cancer malignant ependymoma nasopharyngeal carcinoma primitive neuroectodermal tumor
K	: Q9BS16	oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm sinusitis adrenal cortex carcinoma breast cancer cystic fibrosis glioblastoma large cell medulloblastoma malignant glioma nasopharyngeal carcinoma ovarian cancer primitive neuroectodermal tumor Sjogren syndrome atopic eczema breast carcinoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm sinusitis adrenal cortex carcinoma breast cancer cystic fibrosis glioblastoma large cell medulloblastoma malignant glioma nasopharyngeal carcinoma ovarian cancer primitive neuroectodermal tumor Sjogren syndrome atopic eczema breast carcinoma ductal breast carcinoma in situ interstitial cystitis lung adenocarcinoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma psoriasis atypical teratoid rhabdoid tumor Crohn disease endometriosis invasive ductal breast carcinoma malignant ependymoma medulloblastoma
L	: Q8N0S6	adrenal cortex carcinoma ductal breast carcinoma in situ large cell medulloblastoma non-small cell lung carcinoma atypical teratoid rhabdoid tumor glioblastoma malignant glioma pancreatic intraductal papillary-mucinous neoplasm breast cancer invasive ductal breast carcinoma medulloblastoma primitive neuroectodermal tumor
M [auth N]	: Q96H22	adrenal cortex carcinoma glioblastoma large cell medulloblastoma malignant glioma non-small cell lung carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor IgA glomerulonephritis lung cancer malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma psoriasis ductal breast carcinoma in situ invasive ductal breast carcinoma malignant colon neoplasm adrenal cortex carcinoma glioblastoma large cell medulloblastoma malignant glioma non-small cell lung carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor IgA glomerulonephritis lung cancer malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma psoriasis ductal breast carcinoma in situ invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma pancreatic intraductal papillary-mucinous neoplasm
N [auth O]	: Q9BU64	breast cancer inflammatory bowel disease non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm Crohn disease malignant colon neoplasm osteosarcoma psoriasis dental caries medulloblastoma pancreatic intraductal papillary-mucinous carcinoma
O [auth P]	: Q6IPU0	breast cancer large cell medulloblastoma
P [auth Q]	: Q7L2Z9	cystic fibrosis lung cancer malignant mesothelioma primitive neuroectodermal tumor glioblastoma malignant ependymoma medulloblastoma tuberculosis hepatocellular carcinoma malignant glioma pilocytic astrocytoma
R [auth C]	: Q03188	malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm anorexia nervosa peripheral neuropathy bone disease spinal cord disease malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm anorexia nervosa peripheral neuropathy bone disease spinal cord disease osteosarcoma astrocytic tumor precancerous condition brain cancer head and neck squamous cell carcinoma oligodendroglioma peripheral nervous system disease brain disease tuberculosis cancer glioma acute myeloid leukemia
G [auth X]	: A8MT69	attention deficit hyperactivity disorder, inattentive type lung adenocarcinoma tuberculosis breast cancer lung cancer invasive ductal breast carcinoma psoriasis
Q [auth R]	: Q13352	endometriosis Endometrioma large cell medulloblastoma medulloblastoma plasma cell myeloma lung cancer osteosarcoma glioblastoma lymphoplasmacytic lymphoma pituitary cancer
J [auth I]	: Q92674	adrenal cortex carcinoma glioblastoma lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor large cell medulloblastoma malignant colon neoplasm non-small cell lung carcinoma psoriasis breast cancer lung adenocarcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma