28JW | pdb_000028jw

Structure of the Chlamydomonas reinhardtii chlororibosome with P-site tRNA


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]cL38/PSRP6
B [auth 3]5S rRNA---
C [auth 5]3S rRNA---
D [auth 6]bL33c
E [auth 7]bL34c
F [auth 8]50S ribosomal protein L35
G [auth 9]Large ribosomal subunit protein bL36c
H [auth B]Large ribosomal subunit protein uL2c
I [auth C]Large ribosomal subunit protein uL3c
J [auth D]Large ribosomal subunit protein uL4c
K [auth E]Large ribosomal subunit protein uL5c
L [auth F]Plastid ribosomal protein L6
M [auth G]Large ribosomal subunit protein bL9c
N [auth H]uL10c
O [auth I]Large ribosomal subunit protein uL11c
P [auth J]uL13c
Q [auth K]Large ribosomal subunit protein uL14c
R [auth L]uL15c---
S [auth M]Large ribosomal subunit protein uL16c
T [auth N]Large ribosomal subunit protein bL17c
U [auth O]Large ribosomal subunit protein uL18c
V [auth P]bL19c
W [auth Q]Large ribosomal subunit protein bL20c
X [auth R]bL21c
Y [auth S]Large ribosomal subunit protein uL22c
Z [auth T]uL23c,Large ribosomal subunit protein uL23c
AA [auth U]KOW domain-containing protein
BA [auth V]bL27c
CA [auth W]Large ribosomal subunit protein bL28c
DA [auth X]uL29c
EA [auth Z]bL32c
FA [auth Y]50S ribosomal protein L31
GA [auth 1]23S rRNA---
HA [auth 4]7S RNA---
IA [auth y]P-site tRNA---
JA [auth xx]Nascent peptide---
KA [auth a]Ribosomal protein S1 homologue
LA [auth d]Small ribosomal subunit protein uS4c
MA [auth f]bS6c
NA [auth g]Small ribosomal subunit protein uS7c
OA [auth h]Small ribosomal subunit protein uS8c
PA [auth j]Small ribosomal subunit protein uS10 domain-containing protein
QA [auth k]Small ribosomal subunit protein uS11c
RA [auth l]Small ribosomal subunit protein uS12c
SA [auth m]uS13c
TA [auth n]Small ribosomal subunit protein uS14c
UA [auth o]30S ribosomal protein S15
VA [auth p]30S ribosomal protein S16, chloroplastic
WA [auth q]Small ribosomal subunit protein uS17c
XA [auth r]Small ribosomal subunit protein bS18c
YA [auth s]Small ribosomal subunit protein uS19c
ZA [auth t]bS20c
AB [auth u]bS21c- - -
BB [auth v]30S ribosomal protein 3, chloroplastic
CB [auth x]cS26/PSRP8- - -
DB [auth w]Plastid-specific ribosomal protein-7 -
EB [auth 2]16S rRNA---
FB [auth b]Small ribosomal subunit protein uS2c
GB [auth c]Small ribosomal subunit protein uS3c
HB [auth e]uS5c
IB [auth i]Small ribosomal subunit protein uS9c
JB [auth A]mRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR020526Large ribosomal subunit protein cL38Family
D [auth 6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth 6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
D [auth 6]IPR001705Large ribosomal subunit protein bL33Family
E [auth 7]IPR000271Large ribosomal subunit protein bL34Family
F [auth 8]IPR021137Large ribosomal subunit protein bL35-likeFamily
F [auth 8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
F [auth 8]IPR001706Large ribosomal subunit protein bL35Family
F [auth 8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
G [auth 9]IPR000473Large ribosomal subunit protein bL36Family
G [auth 9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
H [auth B]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
H [auth B]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
H [auth B]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth B]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth B]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
H [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth B]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
H [auth B]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
H [auth B]IPR002171Large ribosomal subunit protein uL2Family
I [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth C]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
I [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth C]IPR000597Large ribosomal subunit protein uL3Family
J [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
J [auth D]IPR002136Large ribosomal subunit protein uL4Family
J [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
K [auth E]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
K [auth E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
K [auth E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
K [auth E]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
K [auth E]IPR002132Large ribosomal subunit protein uL5Family
K [auth E]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
L [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth F]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
L [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
M [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
M [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
M [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
M [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
M [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR000244Large ribosomal subunit protein bL9Family
N [auth H]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
N [auth H]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
N [auth H]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
O [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth I]IPR000911Ribosomal protein uL11Family
O [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
P [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
P [auth J]IPR005822Large ribosomal subunit protein uL13Family
P [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
P [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Q [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth K]IPR000218Large ribosomal subunit protein uL14Family
Q [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Q [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
S [auth M]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
S [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
S [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
S [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
S [auth M]IPR047873Large ribosomal subunit protein uL16Family
T [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
T [auth N]IPR000456Large ribosomal subunit protein bL17Family
U [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
U [auth O]IPR057268Large ribosomal subunit protein uL18Family
U [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
V [auth P]IPR001857Large ribosomal subunit protein bL19Family
V [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
V [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
V [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
W [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
W [auth Q]IPR005813Large ribosomal subunit protein bL20Family
X [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
X [auth R]IPR001787Large ribosomal subunit protein bL21Family
X [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
X [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Y [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Y [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth S]IPR001063Large ribosomal subunit protein uL22Family
Y [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Y [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
Z [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth U]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
AA [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth U]IPR003256Large ribosomal subunit protein uL24Family
AA [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth U]IPR005824KOWDomain
AA [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth V]IPR001684Large ribosomal subunit protein bL27Family
CA [auth W]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
CA [auth W]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
CA [auth W]IPR026569Large ribosomal subunit protein bL28Family
CA [auth W]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DA [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
EA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
EA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth Y]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
FA [auth Y]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
FA [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
KA [auth a]IPR003029S1 domainDomain
KA [auth a]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KA [auth a]IPR050437Small ribosomal subunit protein bS1-likeFamily
LA [auth d]IPR002942RNA-binding S4 domainDomain
LA [auth d]IPR022801Small ribosomal subunit protein uS4Family
LA [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
LA [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
LA [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
LA [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MA [auth f]IPR000529Small ribosomal subunit protein bS6Family
MA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
MA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
MA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
NA [auth g]IPR000235Small ribosomal subunit protein uS7Family
NA [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
NA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
NA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
OA [auth h]IPR000630Small ribosomal subunit protein uS8Family
OA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
OA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
PA [auth j]IPR001848Small ribosomal subunit protein uS10Family
PA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
PA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
QA [auth k]IPR001971Small ribosomal subunit protein uS11Family
QA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
QA [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
RA [auth l]IPR006032Small ribosomal subunit protein uS12Family
RA [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
RA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
SA [auth m]IPR001892Small ribosomal subunit protein uS13Family
SA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
SA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
SA [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
TA [auth n]IPR001209Small ribosomal subunit protein uS14Family
TA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
TA [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
UA [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
UA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UA [auth o]IPR000589Small ribosomal subunit protein uS15Family
VA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
VA [auth p]IPR000307Small ribosomal subunit protein bS16Family
WA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
WA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth q]IPR000266Small ribosomal subunit protein uS17Family
XA [auth r]IPR001648Small ribosomal subunit protein bS18Family
XA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
YA [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
YA [auth s]IPR002222Small ribosomal subunit protein uS19Family
YA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
YA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
ZA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
ZA [auth t]IPR002583Small ribosomal subunit protein bS20Family
BB [auth v]IPR006924Small ribosomal subunit protein cS23-likeFamily
BB [auth v]IPR038447PSRP-3/Ycf65 superfamilyHomologous Superfamily
DB [auth w]IPR003029S1 domainDomain
DB [auth w]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DB [auth w]IPR050437Small ribosomal subunit protein bS1-likeFamily
FB [auth b]IPR002792TRAM domainDomain
FB [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
FB [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
FB [auth b]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FB [auth b]IPR001865Small ribosomal subunit protein uS2Family
GB [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
GB [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
GB [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
GB [auth c]IPR057258Small ribosomal subunit protein uS3Family
GB [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
GB [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
HB [auth e]IPR000851Small ribosomal subunit protein uS5Family
HB [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
HB [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
HB [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HB [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
HB [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IB [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IB [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IB [auth i]IPR000754Small ribosomal subunit protein uS9Family
IB [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily