1ZXT | pdb_00001zxt

Crystal Structure of A Viral Chemokine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1zxtd1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	automated matches	automated matches	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
D	d1zxtd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
C	d1zxtc1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	automated matches	automated matches	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
C	d1zxtc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
B	d1zxtb1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	automated matches	automated matches	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
B	d1zxtb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
A	d1zxta1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	automated matches	automated matches	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)
A	d1zxta2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Human gammaherpesvirus 8 ) [TaxId: 37296 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Interleukin 8-like chemokines	8061441	3001955	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Interleukin 8-like chemokines	8061441	3001955	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Interleukin 8-like chemokines	8061441	3001955	SCOP2B (2022-06-29)
A	SCOP2 Family	Interleukin 8-like chemokines	8061440	4000912	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Interleukin 8-like chemokines	8061441	3001955	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Sigma_1_2	e1zxtD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.1)
C	Sigma_1_2	e1zxtC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.1)
B	Sigma_1_2	e1zxtB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.1)
A	Sigma_1_2	e1zxtA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	functional macrophage inflammatory protein 1-alpha homolog	binding molecular function activator activity signaling receptor binding G protein-coupled receptor binding signaling receptor activator activity protein binding cytokine receptor binding chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity chemokine receptor binding receptor ligand activity CCR chemokine receptor binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus cell surface receptor signaling pathway signaling biological regulation response to cytokine response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway cell communication response to peptide response to chemical cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus cell surface receptor signaling pathway signaling biological regulation response to cytokine response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway cell communication response to peptide response to chemical G protein-coupled receptor signaling pathway cellular process cellular response to cytokine stimulus signal transduction humoral immune response biological process involved in interspecies interaction between organisms response to other organism defense response immune response defense response to symbiont response to external stimulus antimicrobial humoral response response to biotic stimulus antimicrobial humoral immune response mediated by antimicrobial peptide defense response to other organism response to stress immune system process response to external biotic stimulus positive regulation of locomotion regulation of cell motility positive regulation of biological process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001811	Chemokine interleukin-8-like domain	Domain
A, B, C, D	IPR039809	Chemokine beta/gamma/delta	Family
A, B, C, D	IPR036048	Chemokine interleukin-8-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.