1ZW0

Crystal structure of the Yersinia Type III Secretion protein YscE

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	YscE-like	8051497	4007407	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Type III secretion system needle-like	8053887	3000649	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	T3SS_needle_E	e1zw0C1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
E	T3SS_needle_E	e1zw0E1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
G	T3SS_needle_E	e1zw0G1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
A	T3SS_needle_E	e1zw0A1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
B	T3SS_needle_E	e1zw0B1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
D	T3SS_needle_E	e1zw0D1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
F	T3SS_needle_E	e1zw0F1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)
H	T3SS_needle_E	e1zw0H1	A: alpha bundles	X: Type III secretion protein YscE (From Topology)	H: Type III secretion protein YscE (From Topology)	T: Type III secretion protein YscE	F: T3SS_needle_E	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
E	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
G	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
A	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
B	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
D	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
F	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
H	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF08988	Type III secretion system, cytoplasmic E component of needle (T3SS_needle_E)	Type III secretion system, cytoplasmic E component of needle	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	type III secretion protein	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012671	Type III export protein PscE/YscE	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.