1Z8Y | pdb_00001z8y

Mapping the E2 Glycoprotein of Alphaviruses


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
TSCOP2B SuperfamilyTrypsin-like serine proteases 8071561 3000114 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyTrypsin-like serine proteases 8071561 3000114 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyTrypsin-like serine proteases 8071561 3000114 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyTrypsin-like serine proteases 8071561 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FHepar_II_IIIe1z8yF1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
HHepar_II_IIIe1z8yH1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
DHepar_II_IIIe1z8yD1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
BHepar_II_IIIe1z8yB1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
TPeptidase_C4e1z8yT1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: LigT-relatedT: LigT-relatedF: Peptidase_C4ECOD (v294.1)
SPeptidase_C4e1z8yS1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: LigT-relatedT: LigT-relatedF: Peptidase_C4ECOD (v294.1)
RPeptidase_C4e1z8yR1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: LigT-relatedT: LigT-relatedF: Peptidase_C4ECOD (v294.1)
QPeptidase_C4e1z8yQ1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: LigT-relatedT: LigT-relatedF: Peptidase_C4ECOD (v294.1)
AHepar_II_IIIe1z8yA1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
CHepar_II_IIIe1z8yC1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
EHepar_II_IIIe1z8yE1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)
GHepar_II_IIIe1z8yG1 A: a/b three-layered sandwichesX: HTHH: NudixT: winged helix domainF: Hepar_II_IIIECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Q, R, S, T
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
A, C, E, G
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H
Spike glycoprotein E1
Q, R, S, T
Capsid protein C
J, L, N, P
Spike glycoprotein E2
I, K, M, O
Spike glycoprotein E1
A, C, E, G
Spike glycoprotein E1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D, F, H
IPR002533Alphavirus E3 spike glycoproteinDomain
B, D, F, H
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B, D, F, H
IPR014756Immunoglobulin E-setHomologous Superfamily
B, D, F, H
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B, D, F, H
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B, D, F, H
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B, D, F, H
IPR009003Peptidase S1, PA clanHomologous Superfamily
B, D, F, H
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B, D, F, H
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B, D, F, H
IPR000936Alphavirus E2 glycoproteinFamily
B, D, F, H
IPR000930Peptidase S3, togavirinDomain
B, D, F, H
IPR002548Alphavirus E1 glycoproteinDomain
B, D, F, H
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
Q, R, S, T
IPR002533Alphavirus E3 spike glycoproteinDomain
Q, R, S, T
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
Q, R, S, T
IPR014756Immunoglobulin E-setHomologous Superfamily
Q, R, S, T
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
Q, R, S, T
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
Q, R, S, T
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
Q, R, S, T
IPR009003Peptidase S1, PA clanHomologous Superfamily
Q, R, S, T
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
Q, R, S, T
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
Q, R, S, T
IPR000936Alphavirus E2 glycoproteinFamily
Q, R, S, T
IPR000930Peptidase S3, togavirinDomain
Q, R, S, T
IPR002548Alphavirus E1 glycoproteinDomain
Q, R, S, T
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
J, L, N, P
IPR002533Alphavirus E3 spike glycoproteinDomain
J, L, N, P
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
J, L, N, P
IPR014756Immunoglobulin E-setHomologous Superfamily
J, L, N, P
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
J, L, N, P
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
J, L, N, P
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
J, L, N, P
IPR009003Peptidase S1, PA clanHomologous Superfamily
J, L, N, P
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
J, L, N, P
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
J, L, N, P
IPR000936Alphavirus E2 glycoproteinFamily
J, L, N, P
IPR000930Peptidase S3, togavirinDomain
J, L, N, P
IPR002548Alphavirus E1 glycoproteinDomain
J, L, N, P
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
I, K, M, O
IPR002533Alphavirus E3 spike glycoproteinDomain
I, K, M, O
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
I, K, M, O
IPR014756Immunoglobulin E-setHomologous Superfamily
I, K, M, O
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
I, K, M, O
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
I, K, M, O
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
I, K, M, O
IPR009003Peptidase S1, PA clanHomologous Superfamily
I, K, M, O
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
I, K, M, O
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
I, K, M, O
IPR000936Alphavirus E2 glycoproteinFamily
I, K, M, O
IPR000930Peptidase S3, togavirinDomain
I, K, M, O
IPR002548Alphavirus E1 glycoproteinDomain
I, K, M, O
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A, C, E, G
IPR002533Alphavirus E3 spike glycoproteinDomain
A, C, E, G
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A, C, E, G
IPR014756Immunoglobulin E-setHomologous Superfamily
A, C, E, G
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A, C, E, G
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A, C, E, G
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A, C, E, G
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, C, E, G
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A, C, E, G
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A, C, E, G
IPR000936Alphavirus E2 glycoproteinFamily
A, C, E, G
IPR000930Peptidase S3, togavirinDomain
A, C, E, G
IPR002548Alphavirus E1 glycoproteinDomain
A, C, E, G
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily