1YQ5 | pdb_00001yq5

PRD1 vertex protein P5

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L18A	e1yq5B1	A: a/b three-layered sandwiches	X: RuvA-C	H: Integrin beta-1D cytoplasmic tail	T: Integrin beta-1D cytoplasmic tail	F: Ribosomal_L18A	ECOD (v294.1)
A	Ribosomal_L18A	e1yq5A1	A: a/b three-layered sandwiches	X: RuvA-C	H: Integrin beta-1D cytoplasmic tail	T: Integrin beta-1D cytoplasmic tail	F: Ribosomal_L18A	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.670	Mainly Beta	Sandwich	Jelly Rolls	Minor capsid protein.	CATH (4.3.0)
A	2.60.120.670	Mainly Beta	Sandwich	Jelly Rolls	Minor capsid protein.	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08949	Bacteriophage PRD1, spike protein P5, C-terminal (PRD1_P5_C)	Bacteriophage PRD1, spike protein P5, C-terminal	This domain is found at the C-terminal of bacteriophage PRD1 spike protein P5. [1]. The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This C-terminal domain appears to contain t ...	This domain is found at the C-terminal of bacteriophage PRD1 spike protein P5. [1]. The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This C-terminal domain appears to contain the residues responsible for the trimerization of the protein [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Minor capsid protein	-	-	viral capsid icosahedral viral capsid virion component icosahedral viral capsid, spike

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
A, B	IPR038663	Bacteriophage PRD1, P5 C-terminal domain superfamily	Homologous Superfamily
A, B	IPR015044	Bacteriophage PRD1, spike protein P5, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.