1YO5

Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1yo5c1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	ets domain	Sam pointed domain containing ets transcription SPDEF	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	ETS domain	8003123	4000217	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Winged helix DNA-binding domain	8056288	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF00178	e1yo5C1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF00178	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00178	Ets-domain (Ets)	Ets-domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Enhancer site of Prostate Specific Antigen Promoter Region	-	-	-
C	SAM pointed domain containing ets transcription factor	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding organic cyclic compound binding nucleic acid binding sequence-specific double-stranded DNA binding double-stranded DNA binding	developmental process regulation of biological process regulation of cellular process cellular developmental process regulation of developmental process regulation of cell fate commitment biological regulation positive regulation of biological process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation cellular process positive regulation of cell fate commitment developmental process regulation of biological process regulation of cellular process cellular developmental process regulation of developmental process regulation of cell fate commitment biological regulation positive regulation of biological process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation cellular process positive regulation of cell fate commitment cell fate commitment positive regulation of cellular process negative regulation of developmental process negative regulation of biological process negative regulation of cell fate commitment negative regulation of cellular process negative regulation of cell differentiation multicellular organismal process epithelium development digestive system development intestinal epithelial cell differentiation tube development intestinal epithelial cell development cell development tissue development digestive tract development epithelial cell differentiation multicellular organism development epithelial cell development columnar/cuboidal epithelial cell development anatomical structure development columnar/cuboidal epithelial cell differentiation system development cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process macromolecule metabolic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process glandular epithelial cell development glandular epithelial cell differentiation negative regulation of cellular metabolic process negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process negative regulation of macromolecule metabolic process negative regulation of biosynthetic process lobar bronchus epithelium development respiratory tube development lung secretory cell differentiation lung development respiratory system development bronchus development lobar bronchus development animal organ development lung goblet cell differentiation lung epithelium development lung epithelial cell differentiation lung cell differentiation positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process epithelial cell fate commitment	intracellular organelle protein-containing complex intracellular anatomical structure protein-DNA complex organelle intracellular non-membrane-bounded organelle chromatin chromosome cellular anatomical entity non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A	Enhancer site of Prostate Specific Antigen Promoter Region	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C	IPR000418	Ets domain	Domain
C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C	IPR046328	ETS family	Family
C	IPR003118	Pointed domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	Pharos: O95238	ovarian cancer asthma breast carcinoma gastroesophageal reflux disease lung adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia B-cell chronic lymphocytic leukemia breast fibroadenoma heart disease Malignant neoplasm of ovary ovarian neoplasm psoriasis bipolar disorder ductal breast carcinoma in situ invasive ductal breast carcinoma ovarian cancer asthma breast carcinoma gastroesophageal reflux disease lung adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia B-cell chronic lymphocytic leukemia breast fibroadenoma heart disease Malignant neoplasm of ovary ovarian neoplasm psoriasis bipolar disorder ductal breast carcinoma in situ invasive ductal breast carcinoma metabolic syndrome X pancreatic intraductal papillary-mucinous carcinoma Sjogren syndrome

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.