1YE4 | pdb_00001ye4

Crystal structure of the Lys-274 to Arg mutant of Candida tenuis xylose reductase (AKR2B5) bound to NAD+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1ye4d_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	Aldo-keto reductases (NADP)	Xylose reductase	(Yamadazyma tenuis ) [TaxId: 2315449 ],	SCOPe (2.08)
C	d1ye4c_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	Aldo-keto reductases (NADP)	Xylose reductase	(Yamadazyma tenuis ) [TaxId: 2315449 ],	SCOPe (2.08)
B	d1ye4b_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	Aldo-keto reductases (NADP)	Xylose reductase	(Yamadazyma tenuis ) [TaxId: 2315449 ],	SCOPe (2.08)
A	d1ye4a_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	NAD(P)-linked oxidoreductase	Aldo-keto reductases (NADP)	Xylose reductase	(Yamadazyma tenuis ) [TaxId: 2315449 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	NAD(P)-linked oxidoreductase	8036384	3000288	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NAD(P)-linked oxidoreductase	8036384	3000288	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NAD(P)-linked oxidoreductase	8036384	3000288	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NAD(P)-linked oxidoreductase	8036384	3000288	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	7kD_DNA_binding	e1ye4D1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
C	7kD_DNA_binding	e1ye4C1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
B	7kD_DNA_binding	e1ye4B1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)
A	7kD_DNA_binding	e1ye4A1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: 7kD_DNA_binding	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)
C	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)
B	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)
A	3.20.20.100	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	NADP-dependent oxidoreductase domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	NAD(P)H-dependent D-xylose reductase	alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NADP+) activity D-xylose reductase (NADPH) activity catalytic activity aldose reductase (NADPH) activity	monosaccharide metabolic process carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process D-xylose metabolic process D-xylose catabolic process small molecule metabolic process metabolic process cellular process monosaccharide catabolic process small molecule catabolic process pentose metabolic process pentose catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018170	Aldo/keto reductase, conserved site	Conserved Site
A, B, C, D	IPR044486	Aldo-keto reductase family 2B	Family
A, B, C, D	IPR023210	NADP-dependent oxidoreductase domain	Domain
A, B, C, D	IPR036812	NAD(P)-dependent oxidoreductase domain superfamily	Homologous Superfamily
A, B, C, D	IPR020471	Aldo-keto reductase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.