1Y1X | pdb_00001y1x

Structural analysis of a homolog of programmed cell death 6 protein from Leishmania major Friedlin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1y1xa_	All alpha proteins	EF Hand-like	EF-hand	Penta-EF-hand proteins	Programmed cell death 6 protein-like protein	(Leishmania major strain Friedlin ) [TaxId: 347515 ],	SCOPe (2.08)
B	d1y1xb_	All alpha proteins	EF Hand-like	EF-hand	Penta-EF-hand proteins	Programmed cell death 6 protein-like protein	(Leishmania major strain Friedlin ) [TaxId: 347515 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Penta-EF-hand proteins	8031892	4003019	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EF-hand	8044270	3001983	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	EF-hand	8044270	3001983	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SIR2	e1y1xA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: Rubredoxin-related	T: Rubredoxin-related	F: SIR2	ECOD (v294.1)
B	Pyr_redox_2	e1y1xB1	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Pyr_redox_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
B	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Leishmania Major Homolog of Programmed Cell Death 6 Protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium-dependent protein binding protein binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051426	Peflin/Sorcin Calcium-Binding	Family
A, B	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B	IPR002048	EF-hand domain	Domain
A, B	IPR011992	EF-hand domain pair	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.