1XD5

Crystal structures of novel monomeric monocot mannose-binding lectins from Gastrodia elata

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1xd5a_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Gastrodianin (antifungal protein)	(Gastrodia elata ) [TaxId: 91201 ],	SCOPe (2.08)
B	d1xd5b_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Gastrodianin (antifungal protein)	(Gastrodia elata ) [TaxId: 91201 ],	SCOPe (2.08)
C	d1xd5c_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Gastrodianin (antifungal protein)	(Gastrodia elata ) [TaxId: 91201 ],	SCOPe (2.08)
D	d1xd5d_	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	alpha-D-mannose-specific plant lectins	Gastrodianin (antifungal protein)	(Gastrodia elata ) [TaxId: 91201 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	alpha-D-mannose-specific plant lectins	8031455	4002774	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha-D-mannose-specific plant lectins	8043833	3001730	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8043833	3001730	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8043833	3001730	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8043833	3001730	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	B_lectin	e1xd5A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)
B	B_lectin	e1xd5B1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)
C	B_lectin	e1xd5C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)
D	B_lectin	e1xd5D1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-Prism II (From Topology)	T: beta-Prism II	F: B_lectin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
B	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
C	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
D	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	antifungal protein GAFP-1	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001480	Bulb-type lectin domain	Domain
A, B, C, D	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.