1VYH | pdb_00001vyh

PAF-AH Holoenzyme: Lis1/Alfa2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Rd1vyhr1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd1vyhq1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd1vyhn1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md1vyhm1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd1vyhj1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id1vyhi1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1vyhf1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1vyhe1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1vyhb1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1vyha1 Alpha and beta proteins (a/b) Flavodoxin-like SGNH hydrolase Acetylhydrolase Platelet-activating factor acetylhydrolase HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Td1vyht1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Sd1vyhs1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Pd1vyhp1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Od1vyho1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ld1vyhl1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Kd1vyhk1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd1vyhh1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1vyhg1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd1vyhd1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Cd1vyhc1 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Platelet-activating factor acetylhydrolase IB subunit alpha MOUSE (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
TSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2B (2022-06-29)
CSCOP2 FamilyWD40-repeat 8020049 4002744 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyWD40 repeat-like 8032429 3001694 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Re1vyhR1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Qe1vyhQ1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Ne1vyhN1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Me1vyhM1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Je1vyhJ1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Ie1vyhI1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Fe1vyhF1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Ee1vyhE1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Be1vyhB1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Ae1vyhA1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NAD_binding_1F:ECOD (20:10:01)
Te1vyhT1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Se1vyhS1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Pe1vyhP1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Oe1vyhO1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Le1vyhL1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Ke1vyhK1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
He1vyhH1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Ge1vyhG1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
De1vyhD1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Ce1vyhC1 A: beta-propeller-likeX: beta-propellerH: 7-bladedT: WD40F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
R3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
Q3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
N3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
M3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
J3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
I3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
F3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
E3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
B3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
A3.40.50.1110 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold SGNH hydrolaseCATH (4.3.0)
T2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
S2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
P2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
O2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
L2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
K2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
H2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
G2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
D2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
C2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, E, F, I
PF13472GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)GDSL-like Lipase/Acylhydrolase familyThis family of presumed lipases and related enzymes are similar to Pfam:PF00657. Domain
C, D, G, H, K
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, E, F, I
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT
C, D, G, H, K
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, E, F, I
IPR036514SGNH hydrolase superfamilyHomologous Superfamily
A, B, E, F, I
IPR013830SGNH hydrolase-type esterase domainDomain
C, D, G, H, K
IPR019775WD40 repeat, conserved siteConserved Site
C, D, G, H, K
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C, D, G, H, K
IPR006594LIS1 homology motifConserved Site
C, D, G, H, K
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C, D, G, H, K
IPR037190LIS1, N-terminalHomologous Superfamily
C, D, G, H, K
IPR050349WD repeat LIS1/nudF dynein regulationFamily
C, D, G, H, K
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C, D, G, H, K
IPR056795PAC1-like, LisH-like dimerisation domainDomain
C, D, G, H, K
IPR001680WD40 repeatRepeat
C, D, G, H, K
IPR017252Dynein regulator LIS1Family