1VLA | pdb_00001vla

Crystal structure of Hydroperoxide resistance protein OsmC (TM0919) from Thermotoga maritima at 1.80 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1vlad_	Alpha and beta proteins (a+b)	OsmC-like	OsmC-like	YhfA-like	Hypothetical protein TM0919	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
C	d1vlac1	Alpha and beta proteins (a+b)	OsmC-like	OsmC-like	YhfA-like	Hypothetical protein TM0919	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
C	d1vlac2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
B	d1vlab1	Alpha and beta proteins (a+b)	OsmC-like	OsmC-like	YhfA-like	Hypothetical protein TM0919	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
B	d1vlab2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d1vlaa1	Alpha and beta proteins (a+b)	OsmC-like	OsmC-like	YhfA-like	Hypothetical protein TM0919	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d1vlaa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	OsmC-like	8041438	3000621	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	OsmC-like	8041438	3000621	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	OsmC-like	8041438	3000621	SCOP2B (2022-06-29)
A	SCOP2 Family	YhfA-like	8029059	4003719	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	OsmC-like	8041438	3000621	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	OsmC	e1vlaD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: OsmC	ECOD (v294.1)
C	OsmC	e1vlaC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: OsmC	ECOD (v294.1)
B	UBA_8	e1vlaB2	A: a/b three-layered sandwiches	X: Inserted helical domain in fatty acid synthase subunit beta	H: Class 1 N-terminal docking domain	T: Class 1 N-terminal docking domain	F: UBA_8	ECOD (v294.1)
A	OsmC	e1vlaA1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: OsmC-like	T: OsmC-like	F: OsmC	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
D	3.30.300.20	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
C	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
C	3.30.300.20	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
B	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
B	3.30.300.20	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
A	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
A	3.30.300.20	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02566	OsmC-like protein (OsmC)	OsmC-like protein	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
A, B, C, D	IPR036102	OsmC/Ohr superfamily	Homologous Superfamily
A, B, C, D	IPR003718	OsmC/Ohr conserved domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.