1V8P | pdb_00001v8p

Crystal structure of PAE2754 from Pyrobaculum aerophilum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1v8pb1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
B	d1v8pb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
F	d1v8pf1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
F	d1v8pf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
H	d1v8ph_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
J	d1v8pj_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
K	d1v8pk_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
L	d1v8pl_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
I	d1v8pi_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
G	d1v8pg1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
G	d1v8pg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
E	d1v8pe_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
D	d1v8pd1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
D	d1v8pd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
C	d1v8pc1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
C	d1v8pc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)
A	d1v8pa_	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Hypothetical protein PAE2754	(Pyrobaculum aerophilum ) [TaxId: 13773 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PIN domain-like	8035633	3001041	SCOP2B (2022-06-29)
A	SCOP2 Family	PIN domain	8023253	4000475	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PIN domain-like	8035633	3001041	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PIN	e1v8pB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
F	PIN	e1v8pF1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
H	PIN	e1v8pH1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
J	PIN	e1v8pJ1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
K	PIN	e1v8pK1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
L	PIN	e1v8pL1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
I	PIN	e1v8pI1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
G	PIN	e1v8pG1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
E	PIN	e1v8pE1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
D	PIN	e1v8pD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
C	PIN	e1v8pC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
A	PIN	e1v8pA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
F	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
H	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
J	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
K	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
L	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
I	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
G	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
E	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
D	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
C	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
A	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01850	PIN domain (PIN)	PIN domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	hypothetical protein PAE2754	hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exonuclease activity catalytic activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding catalytic activity, acting on RNA RNA nuclease activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002716	PIN domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR044153	VapC3-like, PIN domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029060	PIN-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR022907	VapC family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR051619	Type II TA system ribonuclease PINc/VapC	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.