1ULV | pdb_00001ulv

Crystal Structure of Glucodextranase Complexed with Acarbose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ulva1	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	Bacterial glucoamylase C-terminal domain-like	Glucodextranase, domain A	(Arthrobacter globiformis ) [TaxId: 1665 ],	SCOPe (2.08)
A	d1ulva3	All beta proteins	Immunoglobulin-like beta-sandwich	CBD9-like	Glucodextranase, domain C	Glucodextranase, domain C	(Arthrobacter globiformis ) [TaxId: 1665 ],	SCOPe (2.08)
A	d1ulva2	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	E-set domains of sugar-utilizing enzymes	Glucodextranase, domain B	(Arthrobacter globiformis ) [TaxId: 1665 ],	SCOPe (2.08)
A	d1ulva4	All beta proteins	Supersandwich	Galactose mutarotase-like	Bacterial glucoamylase N-terminal domain-like	Glucodextranase, domain N	(Arthrobacter globiformis ) [TaxId: 1665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Bacterial glucoamylase C-terminal domain-like	8029503	4002437	SCOP2 (2022-06-29)
A	SCOP2 Family	Bacterial glucoamylase N-terminal domain-like	8029504	4002563	SCOP2 (2022-06-29)
A	SCOP2 Family	E-set domains of sugar-utilizing enzymes	8054948	4007565	SCOP2 (2022-06-29)
A	SCOP2 Family	Glucodextranase, domain C	8055282	4007536	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Six-hairpin glycosidases	8041882	3000970	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Galactose mutarotase-like	8041883	3000035	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8054949	3000070	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CBD9-like	8055283	3002050	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glucodextran_C	e1ulvA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glucodextran_C	ECOD (1.6)
A	Glucodextran_B	e1ulvA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glucodextran_B	ECOD (1.6)
A	Glucodextran_N	e1ulvA3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: Glucodextran_N	ECOD (1.6)
A	Glyco_hydro_15	e1ulvA4	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_15	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.98.10	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.1190	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	glucodextranase	binding carbohydrate binding glycosyltransferase activity transferase activity catalytic activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR006425	Glucoamylase, bacterial	Family
A	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A	IPR019248	Glucodextranase-like, C-terminal	Domain
A	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A	IPR015220	Glucodextranase, N-terminal	Domain
A	IPR046966	Glucoamylase, active site	Conserved Site
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR014718	Glycoside hydrolase-type carbohydrate-binding	Homologous Superfamily
A	IPR011613	GH15-like domain	Domain
A	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.