1UDX

Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1udxa1	All beta proteins	Obg-fold	Obg GTP-binding protein N-terminal domain	Obg GTP-binding protein N-terminal domain	Obg GTP-binding protein N-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d1udxa2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Obg GTP-binding protein middle domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d1udxa3	Alpha and beta proteins (a+b)	Obg GTP-binding protein C-terminal domain	Obg GTP-binding protein C-terminal domain	Obg GTP-binding protein C-terminal domain	Obg GTP-binding protein C-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Obg N-terminal domain-like	8056858	4002579	SCOP2 (2022-06-29)
A	SCOP2 Family	50S ribosome-binding GTPase-like	8019353	4004038	SCOP2 (2022-06-29)
A	SCOP2 Family	Obg C-terminal domain-like	8056861	4001247	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Obg N-terminal domain-like	8056859	3001439	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ras-like P-loop GTPases	8019354	3002022	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Obg C-terminal domain-like	8056862	3001149	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GTP1_OBG	e1udxA1	A: beta complex topology	X: Obg GTP-binding protein N-terminal domain (From Topology)	H: Obg GTP-binding protein N-terminal domain (From Topology)	T: Obg GTP-binding protein N-terminal domain	F: GTP1_OBG	ECOD (1.6)
A	DUF1967	e1udxA2	A: a+b two layers	X: Obg GTP-binding protein C-terminal domain-like	H: Obg GTP-binding protein C-terminal domain (From Topology)	T: Obg GTP-binding protein C-terminal domain	F: DUF1967	ECOD (1.6)
A	MnmE_helical_2nd	e1udxA3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.210.12	Mainly Beta	Distorted Sandwich	Spo0b-associated Gtp-binding Protein	Chain: A,	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.30.300.350	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01018	GTP1/OBG (GTP1_OBG)	GTP1/OBG	The N-terminal domain of Swiss:P20964 has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together.	Domain
A	PF09269	Domain of unknown function (DUF1967) (DUF1967)	Domain of unknown function (DUF1967)	Members of this family contain a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. They are predominantly found in the bacterial GTP-binding protein Obg, and are still functionally uncharacterised [1].	Domain
A	PF01926	50S ribosome-binding GTPase (MMR_HSR1)	50S ribosome-binding GTPase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	the GTP-binding protein Obg	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding organic cyclic compound binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR031167	OBG-type guanine nucleotide-binding (G) domain	Domain
A	IPR015349	GTP-binding protein OBG, C-terminal	Domain
A	IPR045086	OBG-type GTPase	Family
A	IPR036346	GTP-binding protein OBG, C-terminal domain superfamily	Homologous Superfamily
A	IPR036726	GTP1/OBG domain superfamily	Homologous Superfamily
A	IPR014100	GTP-binding protein Obg/CgtA	Family
A	IPR006074	GTP1/OBG, conserved site	Conserved Site
A	IPR005225	Small GTP-binding protein domain	Domain
A	IPR006169	GTP1/OBG domain	Domain
A	IPR006073	GTP binding domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.