Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.5
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1sv2b_ | Alpha and beta proteins (a+b) | Peptide deformylase | Peptide deformylase | Peptide deformylase | Peptide deformylase | (Leptospira interrogans ) [TaxId: 173 ], | SCOPe (2.08) |
| A | d1sv2a_ | Alpha and beta proteins (a+b) | Peptide deformylase | Peptide deformylase | Peptide deformylase | Peptide deformylase | (Leptospira interrogans ) [TaxId: 173 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Sigma_1_2 | e1sv2B1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: Sigma_1_2 | ECOD (develop294) |
| A | CH | e1sv2A1 | A: alpha bundles | X: Globin-like | H: Globin-like | T: Globin-like | F: CH | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.45.10 | Alpha Beta | Alpha-Beta Complex | Peptide Deformylase | Peptide deformylase | CATH (4.3.0) |
| A | 3.90.45.10 | Alpha Beta | Alpha-Beta Complex | Peptide Deformylase | Peptide deformylase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01327 | Polypeptide deformylase (Pep_deformylase) | Polypeptide deformylase | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Peptide deformylase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR023635 | Peptide deformylase | Family | |
| IPR036821 | Peptide deformylase superfamily | Homologous Superfamily |














